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Table 2 Class B: Genes under Rel-independent control

From: Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase

Locus taga ratio (WT) ratio (Δrel) gene name Annotation COG classb
Genes under Rel-independent, negative control
cg0464 0.56 0.40 ctpA copper-transporting ATPase P
cg0581 0.58 0.45 rpsL 30S ribosomal protein S12 J
cg0582 0.41 0.43 rpsG 30S ribosomal protein S7 J
cg0593 0.53 0.31 rpsJ 30S ribosomal protein S10 J
cg0594 0.52 0.44 rplC 50S ribosomal protein L3 J
cg0597 0.44 0.26 rplW 50S ribosomal protein L23 J
cg0600 0.54 0.31 rplV 50S ribosomal protein L22 J
cg0602 0.58 0.28 rplP 50S ribosomal protein L16 J
cg0604 0.46 0.47 rpsQ 30S ribosomal protein S17 J
cg0608 0.49 0.26 rplN 50S ribosomal protein L14 J
cg0609 0.59 0.45 rplX 50S ribosomal protein L24 J
cg0610 0.49 0.34 rplE 50S ribosomal protein L5 J
cg0628 0.42 0.34 rpsH 30S ribosomal protein S8 J
cg0629 0.53 0.48 rplF 50S ribosomal protein L6 J
cg0632 0.57 0.19 rpmD 50S ribosomal protein L30 J
cg0634 0.43 0.19 rplO 50S ribosomal protein L15 J
cg0651 0.56 0.31 infA translation initiation factor IF-1 J
cg0652 0.61 0.40 rpsM 30S ribosomal protein S13 J
cg0655 0.57 0.38 rpoA DNA-directed RNA polymerase (α subunit) K
cg0656 0.60 0.43 rplQ 50S ribosomal protein L17 J
cg0673 0.43 0.43 rplM 50S ribosomal protein L13 J
cg0756 0.54 0.48 cstA carbon starvation protein A T
cg0994 0.62 0.41 rpmE 50S ribosomal protein L31 J
cg1343 0.57 0.47 narH respiratory nitrate reductase oxireductase C
cg1344 0.60 0.41 narG nitrate reductase 2 (α subunit) C
cg1345 0.59 0.37 narK nitrate/nitrite transporter P
cg1565 0.66 0.62 rplT 50S ribosomal protein L20 J
cg1623 0.65 0.50   divalent heavy-metal cations transporter P
cg2167 0.46 0.56 rpsO 30S ribosomal protein S15 J
cg2253 0.53 0.49 rpsP 30S ribosomal protein S16 J
cg2573 0.41 0.30 rpsT 30S ribosomal protein S20 J
cg2595 0.65 0.64 rplU 50S ribosomal protein L21 J
cg3140 0.13 0.35 tagA1 DNA-3-methyladenine glycosylase I L
cg3141 0.22 0.46 hmp NO-detoxification flavohemoprotein C
cg3306 0.62 0.41 rplI 50S ribosomal protein L9 J
cg3307 0.44 0.42 ssb single-stranded DNA-binding protein L
Genes under Rel-independent, positive control
cg0310 3.12 4.89 katA catalase P
cg0812 1.66 2.13 dtsR1 acetyl/propionyl-CoA carboxylase (β chain) I
cg0898 3.33 2.75   pyridoxine biosynthesis enzyme H
cg0899 3.29 3.30   glutamine amidotransferase (involved in pyridoxine biosynthesis) H
cg1761 1.55 3.81 nifS2 cysteine desulfhydrase E
cg1763 1.72 6.59 sufD components of an uncharacterized iron-regulated ABC-type transporter O
cg1764 1.79 2.43 sufB component of an uncharacterized iron-regulated ABC-type transporter O
cg2409 2.31 1.61 ctaC cytochrome C oxidase chain II C
cg2644 1.83 2.93 clpP2 ATP-dependent Clp protease, proteolytic subunit OU
cg2732 1.68 2.41 gntV gluconokinase G
cg3114 1.55 2.90 cysN sulfate adenyltransferase subunit 1 P
cg3327 3.03 2.89 dps starvation-induced DNA protecting protein P
  1. a L ocus tag according to [50]
  2. b COG class according to [11]
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