Skip to main content

Table 4 Primer sequences and PCR conditions

From: A biological question and a balanced (orthogonal) design: the ingredients to efficiently analyze two-color microarrays with Confirmatory Factor Analysis

Gene

Primer sequences

T a (C°)

Cycles

GAPDH

F: 5'-caccaccatggagaaggctgg-3' R: 5'-ccaaagttgtcatggatgacc-3'

65

30

COL3A1

F: 5'-agcctccaactgctccta-3' R: 5'-gtccgggtctacctgatt-3'

56

30

ENO2

F: 5'-gtctgctgctcaaggtcaac-3' R: 5'-tccaggcaagcagaggaatc-3'

54

30

FGF18

F: 5'-cttcctgctgctgtgcttcc-3' R: 5'-cactccttgctggtgccatc-3'

57

30

JUN

F: 5'-gctatctaggtggagttg-3' R: 5'-gcacatgccacttgatac-3'

46

30

LHX2

F: 5'-tgaaggacagcctggtctac-3' R: 5'-gagctgcttcaagtccttgg-3'

56

30

MEIS1

F: 5'-gctgttccagcatctaacac-3' R: 5'-tgttgctgaccgtccattac-3'

50

30

MEIS2

F: 5'-gatcacgccgttatgttgcc-3' R: 5'-gctggagttcgagtgatgag-3'

49

30

PBX3

F: 5'-caggaagcaggacatcgg-3' R: 5'-ttggctctgtaatctgagtgtt-3'

56

30

PDGFRL

F: 5'-gtggagctaccctgcgtatc-3' R: 5'-ctgggagaaggtacaaagagttc-3'

60

35

PRICKLE1

F: 5'-aggtacggtattgccagtctt-3' R: 5'-cgaacactgcaacttcacctc-3'

60

35

SAT

F: 5'-tcactcgccgaggttccttg-3' R: 5'-acagcagcactcctcactcc-3'

53

30

SHB

F: 5'-gtttaatggcaacgagaagcg-3' R: 5'-tcctcacagccacgggatag-3'

60

35

TIMP2

F: 5'-ggaaacgacatttatggcaacc-3' R: 5'-acccagtccatccagaggc-3'

60

30

TLX1

F: 5'-acctcactggcctcaccttc-3' R: 5'-cagaccacggctgcagattc-3'

57

30

TOP1

F: 5'-gaaggaacagctagcagatg-3' R: 5'-agaactctgcctcttgagac-3'

50

30

UACA

F: 5'-cactgaatgacacgttagcca-3' R: 5'-atcctgcacctttctcatgct-3'

60

35

  1. Ta, annealing temperature.