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Table 1 Computation times in seconds for each algorithm.

From: Comparison of methods for genomic localization of gene trap sequences

   Computation Time in seconds
  # of Sequences MegaBLAST SSAHAa BLATa
Full-length Genes 3320 1767 (40578)b 361 (29895) 1434 (204331)
Sequence Tags 7043 223 (1025) 38 (5806) 276 (854)
  1. a Reported computation times for SSAHA and BLAT do not include pre-indexing of the genome (see text).
  2. b Results using the repeat-masked genome are listed first, followed by results from the unmasked genome in parenthesis.
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