How well do HapMap SNPs capture the untyped SNPs?

BMC Genomics

Table 2 Transferability assessment of HapMap SNPs

Population	SNPs Transferability Performance with r²≥ 0.80
	Number of SNPs	Mean-r²	Min-r²	Coverage
European	843	0.984	0.459	96.4%
Asian	693	0.982	0.410	97.1%
African	406	0.982	0.510	94.8%

HapMap data are used as the reference panel and the corresponding population in NIEHS is assessed. HapMap CEU panel for NIEHS European assessment; HapMap CHB panel for NIEHS Asian assessment and HapMap YRI panel for NIEHS African assessment.

ISSN: 1471-2164