Table 4 The longest SSR motifs found in EST consensus and transcript sequences for the three oomycetes analyzed.
Repeat Typea | |||||
|---|---|---|---|---|---|
di | tri | tetra | penta | Hexa | |
P. infestans | TA (28) | ATT (69) | CAAG (20) | ATTTT (20) | CCTGCA (36) |
TG (28) | ATT (33) | AAAT (20) | AAAGA (20) | GTTGAG (30) | |
AC (24) | AAG (30) | ATTA (20) | CGTGG (15) | CAGCAA (24) | |
AT (24) | AAC (27) | ATAA (16) | TTGTT (15) | AGCAGG (24) | |
P. sojae | AG (28) | AAG (66) | AAGA (32) | CAAGC (30) | TCGGCA (144) |
AG (28) | AGG (57) | GCCT (24) | GTGTA (25) | TCTACT (96) | |
CT (18) | AAG (51) | GCCT (24) | TCTCA (20) | GCTACG (54) | |
CT (18) | AGG (48) | AGCC (24) | AGAGC (20) | AAGACC (54) | |
P. ramorum | AG (14) | AGC (45) | CTGG (16) | CAAAA (15) | CAGGAG (90) |
CG (14) | CGT (30) | CTTC (16) | AGCGC (15) | AGCGAC (90) | |
AG (12) | AAG (30) | CAGC (16) | CAAGC (15) | GAAGAC (48) | |
AC (12) | AGG (30) | GTGC (16) | CCAAG (15) | CGAGTC (42) | |