Skip to main content

Advertisement

Table 3 25 novel alternative splicing events in androgen-stimulated LNCaP cells

From: Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

Ensembl ID Name Description Splice description
ENST00000248342 eIF3k Eukaryotic translation initiation factor 3 subunit 12 25 bp deletion of 3' end of exon 1
ENST00000207437 MLEY_HUMAN Myosin light chain 1, slow-twitch muscle A isoform 64 bp deletion of 5' end of exon 2 (contained in 5' UTR)
ENST00000330964 RPS27L 40S ribosomal protein S27-like protein Deleteion of retained intron in exon 1 (54 bp of coding sequence)
ENST00000358666 UBL5 Ubiquitin-like protein 5 121 bp deletion of 3' end of exon 1 (contained in 5' UTR)
ENST00000262746 PRDX1 Peroxiredoxin 1 227 bp deletion of 3' end of exon 1 (contained in 5' UTR)
ENST00000297290 BRI3 Brain protein I3 See Figure 3.
ENST00000341480 MED18 Mediator of RNA polymerase II transcription, subunit 18 homolog Deletion of retained intron in exon 3 (entriely contained in 3' UTR)
ENST00000270799 RPL11 60S ribosomal protein L11 89 bp deletion of 3' end of exon 2 and 103 bp deletion of 5' end of exon 5
ENST00000303553 NDUFA3 NADH-ubiquinone oxidoreductase B9 subunit Deletion of 45 bp retained intron in exon 4
ENST00000222673 OGDH (MTpc) 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor Deletion of 210 bp retained intron (contained in 3' UTR)
ENST00000361643 This gene can be found on Chromosome MT at location 1,673–3,230. Deletion of 47 bps
ENST00000361390 ROPN1B (MT) NADH-ubiquinone oxidoreductase chain 1 Deletion of 648 bp
ENST00000302192 Q8WUV6_HUMAN Podocalyxin-like 2 Deletion of 363 bp retained intron in exon 8
ENST00000361643 This gene can be found on Chromosome MT at location 1,673–3,230. Deletion of 1268 bps
ENST00000261798 CSNK1A1 Casein kinase I, alpha isoform Insertion of unknown length between exons 4 and 5
ENST00000339892 This gene can be found on Chromosome 1 at location 234,416,172–234,416,946. Deletion of 42 bp in 3' UTR
ENST00000322297 OAZ1 Ornithine decarboxylase antizyme Deletion of last 4 coding bp and 54 bp of 3' UTR
ENST00000224892 LHPP Phospholysine phosphohistidine inorganic pyrophosphate phosphatase Deletion of last 105 bp of exon 1, exons 2–6, and first 608 bp of exon 7
ENST00000361381 NU4M_HUMAN (MT) NADH-ubiquinone oxidoreductase chain 4 Deletion of 152 bp
ENST00000358666 UBL5 Ubiquitin-like protein 5 80 bp deletion of 3' end of exon 1 (contained in 5' UTR)
ENST00000239377 PCMT1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase 47 bp deletion of 3' end of exon 7 (10 bp coding, remainder in 5' UTR)
ENST00000361899 ATP6 (MT) ATPase protein 6 Deletion of 91 bp
ENST00000291565 PDXK Pyridoxal kinase Deletion of 281 bp retained intron (contained in 3' UTR)
ENST00000308964 This gene can be found on Chromosome 19 at location 60,851,213–60,856,333. 42 bp deletion of 3' end of exon 2, exons 3–5, and first 541 bp of exon 6
ENST00000361390 ROPN1B(MT) NADH-ubiquinone oxidoreductase chain 1 Deletion of 346 bp