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Table 4 The HQD count, mean and median phred scores and the HQD count

From: Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

HQD Type Count Mean Median Count > 400
Confirmable 86 342.4 163 16
Novel 1364 270.2 136 175
Other 29 233.2 122 4
  1. Counts collected for phred scores > 400 for each of the three HDQ classes: those confirmable by Ensembl, those that occur in positions with no known variations, and those that have incorrect mutations at positions with known variations ("Other").