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Table 1 Marker genes used in the TRAC analysis.

From: Transcriptional monitoring of steady state and effects of anaerobic phases in chemostat cultures of the filamentous fungus Trichoderma reesei

Gene name

Length nt

ORF no.

Function

Sequence

Pool1

    

cbh1

25

22421

cellobiohydrolyase

CATTCTGGACATAGTATCGGTTGAT

egl1

27

42363

endoglucanase

CGGACTTTGTACACTTGTAGGTTGTCA

sod2

29

42675

Superoxide dismutase

TTGATGACGTCCCAGATGGCGCTGAAGTA

pdi1

33

45146

protein disulfide isomerase

GGTCAAAGGGGAACTTGAGGTTCTTCTCAATGT

gap1

33

43090

general amino acid transporter

TGATACTTCCAGGCATTGCGGAATCGGATGTGG

axp1

33

21826

acidic extracellular protease

AAGTTGAAGGTGGCATCCTTGATGTTTGCTTTG

trx2

39

9865

thioredoxin protein

CAAACTTGACAAAGTGGACCTTGTCCTTGAACTCTGCGT

ccg9

39

43571

Clock controlled gene, cell wall biogenensis

AAACTTTGACTTCGAACCCTTCATACGTCGACAGTTGAA

bgl2

41

42449

β-glucosidase

CGTTATAGTACTTGACCCTGAAGTCATCTTCGAGAATCTTC

bga1

43

45191

β-galactosidase

TTTGGAATGCCAATGATCTCGAGCGGCGTTGTGACGTTGAAAT

Pool2

    

mca1

25

20144

metacaspase, cysteine protease, apoptosis

AATACCCTGCGTGGAGTAGATGTAC

bip1

27

42955

protein chaperon

AGGGGGTTGACGTCCATGAGAACAATG

aep1

25

46483

alkaline extracellular protease

CATGGAGGTGCCGCTAATCGTGTTT

vpa1

27

44744

vacuolar protease A

GTGATGTCGGGGAGGGAATCACGCTTG

hsp30

31

29985

heat shock protein

GTACTTTGCGTTGTCGGTAGGCTTGTTGCTG

con6

31

35051

ligth induced conidiation gene

TGCTTAGCGTTTTCCTTTGCTTCCTCCGACA

trr1

31

45052

thioredoxin reductase

AATGACGAAGAGGGGCTTGTTGCGGAAGATG

gcn4

37

37844

transcription factor

TGAAGAAGACGATCGGTACATGGGCTCTGATTCCAAA

chs1

37

43213

chitin synthase

GAAAGAAGCGATAAAGTAGAGGCCGTAAATGGTAATC

nsf1

41

42584

general membrane fusion factor

CAACAGGGCATCGTCAATCATGTCTTTTCGATTCGTCATTC

nth1

43

44650

neutral trehalase

AACGTAACTGGCATTGACCCATCCAAATCCTTCTTTCGCAACG

ctaA

41

21112

ATPase copper transport

ACGAGTGATTGTGCCGGTTTTGTCCAAGACGACTTTGGTAA

Pool3

    

eno

25

43415

enolase

TTACGGAAGTTGGTGCCAGCGTAGA

rpl16a

27

43406

ribosomal protein L13A, 60S subunit

CAACCTTCTTGCGCTCGTAGTAGGCAG

gpd1

29

20456

glyceraldehyde-3-phosphate dehydrogenase

ACGAAGTTGGGGTTCAGGGAGATACCAGC

hem6

29

13475

Coproporphyrinogen III oxidase, heme biosynthesis

ACTTCTTGAACCGAGGGTAGTACGTCTTG

hsp70

33

27833

heat shock protein

TTGGTGATGACAATCTTGTTGGACTTACCAGTG

hsp105

37

42578

ER chaperon

CGGGCTTATCCTCAGTGTCAACTTGTTGATAGAATAA

rps16b

35

29002

ribosomal protein S16A, 40S subunit

TGACACGGACGCGGATGTCGACGTTGGCGAACTTG

acs1

39

20403

acetyl CoA synthase

TTGTGCTTCTCAATAATGTCCCAGTACCTTGAGAAGTTG

tps1

41

21151

trehalose-6-phosphate synthase

AACTTGCGGATGAACTTGGTGATCCACGACTGGACATTCTG

  1. Oligonucleotide probes binding to respective mRNA targets are organised into 3 pools according to their migration in capillary electrophoresis.