Skip to main content

Table 2 The comparative results of ESTs to COGs and KOGs

From: Analysis of the dermatophyte Trichophyton rubrum expressed sequence tags

  Functional Classification Numbers in COG Percents in COG Numbers in KOG Percents in KOG
  Information storage and processing     
J Translation, ribosomal structure and biogenesis 413 3.73% 408 3.68%
A RNA processing and modification 21 0.19% 165 1.49%
K Transcription 378 3.41% 131 1.18%
L DNA replication, recombination and repair 213 1.92% 85 0.77%
B chromatin structure and dynamics 32 0.29% 48 0.43%
  Cellular Processes and Signaling     
D Cell cycle control, cell division, chromosome partitioning 49 0.44% 86 0.78%
Y Nuclear structure 3 0.03% 19 0.17%
V Defense mechanisms 70 0.63% 17 0.15%
T Signal transduction mechanisms 240 2.17% 209 1.89%
M Cell wall/membrane/envelope biogenesis 152 1.37% 37 0.33%
N Cell motility 64 0.58% 1 0.01%
Z Cytoskeleton 45 0.41% 95 0.86%
W Extracellular structures    4 0.04%
U Intracellular trafficking, secretion, and vesicular transport 153 1.38% 244 2.20%
O Posttranslational modification, protein turnover, chaperones 345 3.11% 424 3.82%
  Metabolism     
C Energy production and conversion 365 3.29% 315 2.84%
G Carbohydrate transport and metabolism 409 3.69% 188 1.70%
E Amino acid transport and metabolism 669 6.04% 343 3.09%
F Nucleotide transport and metabolism 120 1.08% 110 0.99%
H Coenzyme transport and metabolism 179 1.61% 118 1.06%
I Lipid transport and metabolism 256 2.31% 219 1.98%
P Inorganic ion transport and metabolism 402 3.63% 118 1.06%
Q Secondary metabolites biosynthesis, transport and catabolism 188 1.70% 131 1.18%
  Poorly characterized     
R General function prediction only 844 7.61% 530 4.78%
S Function unknown 219 1.98% 154 1.39%
  Total 11085