Table 2 Accuracy of associations confirmed by literature broken down by individual condition. Characterized are those pairs where the COG has a known function. Confirmed are those associations that were verified in the literature.
From: Integration of curated databases to identify genotype-phenotype associations
Lab/Condition | Correlation Above 0.8 | Correlation Above 0.9 | ||||
|---|---|---|---|---|---|---|
| Â | Total Characterized Pairs | Confirmed Pair Associations | Percent Confirmed | Total Characterized Pairs | Confirmed Pair Associations | Percent Confirmed |
B01/Gram-negative | 17 | 16 | 94% | 12 | 12 | 100% |
B02/Gram-positive | 6 | 3 | 50% | 2 | 2 | 100% |
B28/Growth on Ordinary Blood Agar | 5 | 0 | 0% | NA | NA | NA |
B29/Growth on MacConkey Agar | 31 | 16 | 52% | 4 | 4 | 100% |
B30/Oxidase | 2 | 2 | 100% | NA | NA | NA |
B31/Catalase | 11 | 7 | 64% | 8 | 5 | 63% |
FAC/L-Arabinose | 1 | 1 | 100% | 1 | 1 | 100% |
FAJ/Lactose | 1 | 0 | 0% | NA | NA | NA |
FAL/D-Mannitol | 1 | 0 | 0% | NA | NA | NA |
FAM/D-Mannose | 2 | 2 | 100% | NA | NA | NA |
FAP/L-Rhamnose | 1 | 0 | 0% | 2 | 0 | 0% |
FAT/Trehalose | 2 | 2 | 100% | 2 | 2 | 100% |
FAU/D-Xylose | 1 | 0 | 0% | NA | NA | NA |
G03/Motile | 17 | 17 | 100% | 5 | 5 | 100% |
G14/Nitrate to Nitrite | 1 | 0 | 0% | NA | NA | NA |