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Table 2 Accuracy of associations confirmed by literature broken down by individual condition. Characterized are those pairs where the COG has a known function. Confirmed are those associations that were verified in the literature.

From: Integration of curated databases to identify genotype-phenotype associations

Lab/Condition Correlation Above 0.8 Correlation Above 0.9
  Total Characterized Pairs Confirmed Pair Associations Percent Confirmed Total Characterized Pairs Confirmed Pair Associations Percent Confirmed
B01/Gram-negative 17 16 94% 12 12 100%
B02/Gram-positive 6 3 50% 2 2 100%
B28/Growth on Ordinary Blood Agar 5 0 0% NA NA NA
B29/Growth on MacConkey Agar 31 16 52% 4 4 100%
B30/Oxidase 2 2 100% NA NA NA
B31/Catalase 11 7 64% 8 5 63%
FAC/L-Arabinose 1 1 100% 1 1 100%
FAJ/Lactose 1 0 0% NA NA NA
FAL/D-Mannitol 1 0 0% NA NA NA
FAM/D-Mannose 2 2 100% NA NA NA
FAP/L-Rhamnose 1 0 0% 2 0 0%
FAT/Trehalose 2 2 100% 2 2 100%
FAU/D-Xylose 1 0 0% NA NA NA
G03/Motile 17 17 100% 5 5 100%
G14/Nitrate to Nitrite 1 0 0% NA NA NA
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