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Table 2 P. vivax ORFs containing MGE domains.

From: An analysis of mobile genetic elements in three Plasmodium species and their potential impact on the nucleotide composition of the P. falciparum genome

Pfam entry

Number of ORFs

E values and/or sequence alignment scores

PF03184 Endonuclease CENP-B protein

2

E values -9 and -10

Scores 37 and 39

PF00692 DeoxyUTP pyrophosphatase

1

E value -8

Score 35.5

PF00078 Reverse transcriptase

23

E values -8 to -27

Scores 35 to 104

PF00589 phage integrase catalytic domain

1

E value -13

Score 52

PF07460 Intron-encoded nuclease 2

1

E value -3

Score 21

Similarity to RT sequence developed in this study

  

Determined by BLASTP search

2

E values -2 and -3

Similarity to P. y. yoelii and P. falciparum ORFs not in Pfam

  

Determined by BLASTP search

10

E values -4 to -168

  1. ORFs containing MGE domains were identified in the genome in three ways: i) a HMMER search using Pfam_fs HMMs ii) a BLASTP search using the RT consensus sequence developed in this study, and iii) a BLASTP search using the P. y. yoelii and P. falciparum MGE domain sequences identified from InterPro but not located in Pfam. Only the Pfam entries with significant hits are listed.