Skip to main content

Table 4 Summary of qRT-PCR analysis of the selected clones from the AD-C library

From: Novel subtractive transcription-based amplification of mRNA (STAR) method and its application in search of rare and differentially expressed genes in AD brains

Name Acce # Description of matched genes % Up Abundance relative to β-actin
USP10 NM_005153 ubiquitin specific protease 10 38% 12.50%
FNBP2 XM_059095 formin binding protein 2 19% 1.10%
LMNA NM_170708 lamin A/C 36% 6.0%
RPS20 NM_001023 ribosomal protein S20 23% 12%
PREPL AB007896 prolyl endopeptidase-like 25% 21.90%
SKP1A NM_170679 cyclin A/CDK2-associated protein p19 41% 67%
MARK2 BC008771 ELKL motif kinase 32% 0.84%
AHCTF1 AB059277 AT hook containing transcription factor 1 60% 10.90%
PLRG1 BC020786 pleiotropic regulator 1 32% 0.34%
APRIN NM_015032 androgen-induced proliferation inhibitor 32% 19.80%
CENTG2 NM_014914 centaurin, gamma 2 41% 6.60%
SCARB2 NM_005506 scavenger receptor class B, member 2 42% 416%
SPTBN2 NM_006946 spectrin, beta, non-erythrocytic 2 47% 34.50%
SEPT6 NM_015129 septin 6 27% 59%
SAFB NM_002967 scaffold attachment factor B 42% 7.10%
DRD1IP NM_015722 dopamine receptor D1 interacting protein 40% 26%
ARHGAP1 NM_004308 Rho GTPase activating protein 1 26% 241%
KNS2 NM_005552 kinesin 2 60/70kDa, transcript variant 1 no change 4.10%
KIAA1078 NM_203459 calmodulin regulated spectrin-associated protein 1-like 1 no change 25%
ANKMY2 BC035353 ankyrin repeat and MYND domain containing 2 no change 17%
FBXO33 BC053537 F-box protein 33, mRNA no change 0.78%
KLHDC2 NM_014315 kelch domain containing 2 no change 100%
RPRC1 NM_018067 arginine/proline rich coiled-coil 1 no change 28%
HSPH1 NM_006644 heat shock 105kD no change 48%
C21orf33 NM_004649 chromosome 21 open reading frame 33 no change 48%
MBD1 AF120981 methyl-CpG binding domain protein 1 no change 0.49%
STXBP1 NM_003165 syntaxin binding protein 1 no change 93.00%
NEK1 AF155113 NY-REN-55 antigen no change 12.30%
ASB1 NM_016114 ankyrin repeat and SOCS box-containing 1 no change 9.10%
CCNI NM_006835 cyclin I no change 49%
  AL109709 EST no change 22%
  BC035832 EST 17% 521%
  AP002833 genomic DNA no change 6.30%
  AC104964 genomic DNA no change 33%
  AP002833 genomic DNA 35% 0.06%
  AL138718 genomic DNA 50% 0.0032%
  AC091609 genomic DNA no change 0.01%
  AL953889 genomic DNA no change 1.60%