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Table 3 Percentage identities of minicircle ORFs

From: Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes

 

A. operculatum

H. triquetra

 

percentage identities

percentage identities

PsaA

99.3

50.7

PsaB

97.6

42.7

PsbA

99.7

86.1

PsbB

100.0

59.9

PsbC

99.6

64.5

PsbD

99.7

na

PsbE

100.0

na

PsbI

100.0

na

PetB

99.1

75.3

PetD

100.0

na

AtpA

99.8

54.1

AtpB

99.3

na

ORF1

98.6

na

ORF2

100.0

na

ORF3

100.0

na

LSU rRNA

92.0 over 2662 base stretch, not all of this may be LSU rDNA. (DNA comparison)

67.6 over 692 base stretch. (DNA comparison)

SSU rRNA

81.1 over 2403 base stretch, not all of this may be SSU rDNA. (DNA comparison)

69.8 over 288 base stretch. (DNA comparison)

  1. Percentage identities were calculated by comparison to A. carterae sequences using pairwise Blast [36].
  2. na – sequences unavailable or not found in the other species.