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Table 4 Distribution of rare codons in Amphidinium minicircle protein genes.

From: Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes

 

A. c./no.

A. c./total amino acids

% rare codons

A. o./no.

A. o./total amino acids

% rare codons

psaA

16

678

2.4

13

671

1.9

psaB

9

644

1.4

12

685

1.8

psbA

4

340

1.2

2

340

0.6

psbB

3

506

0.6

3

506

0.6

psbC

5

463

1.1

5

463

1.1

psbD

2

355

0.6

1

355

0.3

psbE

0

77

-

0

77

-

psbI

2

35

5.7

1

35

2.9

petB

4

219

0.9

2

219

0.9

petD

2

157

1.3

2

157

1.3

atpA

4

488

0.8

4

488

0.8

atpB

5

590

0.8

6

590

1.0

ORF1 (psbD/E/I)

3

73

4.1

3

73

4.1

ORF2 (petD)

5

90

5.6

5

90

5.6

ORF3 (petD)

9

150

6.0

8

150

5.3

  1. Rare codons comprise 1.2% of all codons in the previously identified gene set.
  2. A. c.: Amphidinium carterae, A. o.: Amphidinium operculatum.