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Table 2 SNP allele frequencies and associations with measured traits.

From: Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus

SNP_ID Gene Breed A C G T P value
Puberty        
CS2000955300001_532 ANAPC5 Angus   0.16   0.84 N.S.
CS2000053300001_175 HMOX2 Angus    0.58 0.42 N.S.
CS2000507200001_1768 ITIH2 Angus 0.41 0.59    N.S.
CS2000742700001_590 TNFAIP6 Angus   0.86   0.14 N.S.
CS2001189600001_489 ITHI5 Angus 0.84 0.16    N.S.
CS2000742700001_881 TNFAIP6 Angus    1   N.S.
FE resistance        
CS2000348000001_262 ABCB8 Friesian   0.62 0.38   N.S.
   Jersey   0.63 0.37   N.S.
CS2001041800001_1020 SELP Friesian 0.40 0.60    N.S.
   Jersey 0.44 0.56    N.S.
CS2001337000001_147 CAMP Friesian   0.50   0.50 N.S.
   Jersey   0.51   0.49 N.S.
CS2000058700002_510 CD1D Friesian 0.48   0.52   N.S.
   Jersey 0.49   0.51   N.S.
CS2001176100001_1124 LTB4R Friesian    0.16 0.84 N.S.
   Jersey    0.24 0.76 N.S.
CS2000288200001_809 BCL10 Friesian   0.93   0.07 N.S.
   Jersey   0.93   0.07 0.004
CS2000088400007_1168 GBP1 Friesian   0.50   0.50 N.S.
   Jersey   0.52   0.48 N.S.
CS2001051700001_529 C8A Friesian   0.88   0.12 N.S.
   Jersey   0.75   0.25 0.03
CS2000129600001_1471 HRG Friesian   0.93   0.07 0.05
   Jersey   0.96   0.04 N.S.
CS2001364900001_48 LTB Friesian   0.74 0.26   N.S.
   Jersey   0.65 0.35   N.S.
CS2000088400007_1687 GBP1 Friesian 0.49    0.51 N.S.
   Jersey 0.49    0.51 N.S.
CS2000088400007_313 GBP1 Friesian   0.35   0.65 N.S.
   Jersey   0.29   0.71 0.006
CS2000088400007_996 GBP1 Friesian 0.50   0.50   N.S.
   Jersey 0.50   0.50   N.S.
CS2000257600002_413 ABCC3 Friesian   0.76 0.24   0.008
   Jersey   0.77 0.23   N.S.
CS2000313400001_398 OAS1 Friesian 0.23   0.77   N.S.
   Jersey 0.22   0.78   N.S.
CS2000348000001_980 ABCB8 Friesian    1   N.S.
   Jersey    1   N.S.
CS2001315600002_1764 SERPING1 Friesian    0.54 0.46 N.S.
   Jersey    0.56 0.44 N.S.
CS2000173400002_1082 IGSF8 Friesian    0.50 0.50 N.S.
   Jersey    0.73 0.27 N.S.
CS2000058700002_496 CD1D Friesian    0.50 0.50 N.S.
   Jersey    0.50 0.50 N.S.
CS2000058700002_976 CD1D Friesian 0.50   0.50   N.S.
   Jersey 0.48   0.52   N.S.
CS2001406800001_259 TAP2 Friesian   0.70   0.30 N.S.
   Jersey   0.73   0.27 N.S.
CS2000313400001_155 OAS1 Friesian   0.14 0.86   0.04
   Jersey   0.13 0.87   N.S.
CS2000176900001_1229 HP Friesian 0.17   0.83   N.S.
   Jersey 0.35   0.65   N.S.
CS2000045400004_497 CYP4A11 Friesian   1    N.S.
   Jersey   1    N.S.
CS2000218500001_1206 CD44 Friesian 0.60 0.40    N.S.
   Jersey 0.43 0.57    N.S.
CS2000068700001_485 GIMAP5 Friesian 0.38   0.62   N.S.
   Jersey 0.38   0.62   N.S.
Meat yield        
CS2000104200001_1729 PLG Angus   0.48   0.52 N.S.
   Hereford   0.53   0.47 N.S.
   Simmental   0.68   0.32 N.S.
CS2000443600001_487 EPHX2 Angus 0.98   0.02   N.S.
   Hereford 0.63   0.37   N.S.
   Simmental 0.86   0.14   N.S.
CS2001349700001_285 ALDOB Angus 0.72   0.28   N.S.
   Hereford 0.58   0.42   N.S.
   Simmental 0.43   0.57   N.S.
CS2000071200002_488 ACADS Angus 0.13   0.87   N.S.
   Hereford 0.22   0.78   N.S.
   Simmental 0.14   0.86   N.S.
CS2000660700001_630 PHYH Angus 0.24   0.76   N.S.
   Hereford 0.02   0.98   N.S.
   Simmental    1   N.S.
CS2000613600001_354 WARS2 Angus 0.36   0.64   N.S.
   Hereford 0.55   0.45   N.S.
   Simmental 0.18   0.82   N.S.
CS2003511700001_128 LEP Angus   0.40   0.6 N.S.
   Hereford   0.31   0.69 N.S.
   Simmental   0.58   0.42 N.S.
CS2000005800001_509 ACP1 Angus   0.51   0.49 N.S.
   Hereford   0.53   0.47 N.S.
   Simmental   0.50   0.50 N.S.
CS2001330700002_10011 TNXB Angus 0.55   0.45   N.S.
   Hereford 0.49   0.51   N.S.
   Simmental 0.61   0.39   N.S.
  1. N.S. = not significant (P > 0.05).
  2. Allele frequencies in bold are not in Hardy-Weinberg equilibrium.