Table 3 Deletion regions from the conservative "LOH/Model A"
Deletion region no. | Chr | Cytoband(s) | Start (Mb) | End (Mb) | Size (Mb) | No. SNPs in each deletion region | Genes in the deletion regions* |
|---|---|---|---|---|---|---|---|
1 | 3 | 3p26 | 4.34 | 5.26 | 0.92 | 5 | SUMF1 MRPS10P2 LOC401048 ITPR1 BHLHB2 LOC442073 ARL10C EDEM1 |
2 | 3 | 3p24-p22 | 31.02 | 33.39 | 2.37 | 5 | LOC339897 LOC391524 SIMP OSBPL10 LOC344787 KIAA0089 LOC402126 CKLFSF8 CKLFSF7 KKLFSF6 |
LOC285260 DNCLI1 LOC391526 CNOT10 LOC389101 LOC389102 LOC131405 CCR4 GLB1CRTAP | |||||||
KIAA0527 FBXL2 UBP1* | |||||||
3 | 4 | 4p15.3 | 9.9 | 9.91 | 0.01 | 5 | NA |
4 | 4 | 4q13 | 72.58 | 74.06 | 1.48 | 6 | SLC4A4 GC LOC441023 GPR74 ADAMTS3 LOC391669 FLJ1305 |
5 | 4 | 4q22 | 86.78 | 88.62 | 1.84 | 7 | ARHGAP24 MAPK10 PTPN13 SOAT LOC401142 MGC26744 LOC260422 MLLT2 KLHL8 GAPDL4 |
FAM13A1 LOC441028 SCDR9 | |||||||
6 | 4 | 4q22 | 90.72 | 94.98 | 4.26 | 6 | SNCA MMRN1 MGC48628 TMSL3 LOC389212 LOC133083 GRID2 BMPR1B |
7 | 9 | 9p23 | 11.19 | 12.05 | 0.86 | 6 | NA |
8 | 9 | 9p21.3 | 26.02 | 27.53 | 1.51 | 6 | LOC441390 C9orf82 PLAA LRRC19 CCDC2 TEK C9orf14 C9orf11 MOBKL2B IFNK |
9 | 9 | 9q22.1 | 86.09 | 87.21 | 1.12 | 6 | HBLD2 ZCCHC6 LOC392358 GAS1 LOC157956 FLJ45537 KIAA1529 TMOD1 C9orf197 |
10 | 9 | 9q22.3 | 97.08 | 97.42 | 0.34 | 5 | LOC389777 LOC286359 TDRD7 |
11 | 9 | 9q31.3 | 102.8 | 103.35 | 0.53 | 5 | CYLC2 LOC340511 ZNF618 |
12 | 13 | 13q12.3-q13 | 30 | 31.2 | 1.2 | 13 | C13orf22 ALOX5AP LOC387917 LOC401732 LOC440132 FLJ14834 MGC40178 HSPH1 B3GTL 13CDNA73 |
13 | 13 | 13q13.1-q13.3 | 32 | 34.89 | 2.89 | 7 | PFAAP5 APRIN LOC122038 KL STARD13 RFC3 NBEA DCNAMKL1 |
14 | 13 | 13q13.3 | 37.13 | 39.05 | 1.92 | 8 | TRPC4 Ufm1 DKFZp686J0811 STOML3 C13orf23 LOC387921 LOC390397 LHFP |
15 | 13 | 13q22 | 75.3 | 76.82 | 1.52 | 8 | KCTD12 BTF3L1 LOC341720 LOC390413 DHX9P CLN5 FBXL3A MYCBP2 |
16 | 17 | 17p13- | 0.86 | 4.32 | 3.46 | 5 | ABR MRPL14P1 LOC390754 TUSC5 YWHAE CRK MYO1C SKIP PITPN MGC34680 SCARF1 RILP |
p13.2 | PRPF8 MGC14376 FLJ33817 SERPINF2 SERPINF1 SMYD4 RPA1 RTN4RL1 DPH2L1OVCA2 HIC1 C17orf31 | ||||||
LOC440396 SRR FLJ10534 RUTBC1 MNT LOC284009 MGC3329 PAFAH1B1 KIAA0664 GARNL OR1D4 | |||||||
OR1D2 OR1E3P OR1G1 OR1P1P OR1A2 OR1A1OR1D3P OR3A1 LOC390756 OR3A2 OR1R1P OR1E1 | |||||||
OR3A3 OR1E2 NYD-SP20 ASPA TRPV3 TRPV1 CARKL CTNS TAX1BP3 MGC2963 P2RX5 GSG2 | |||||||
ITGAE HSA277841 CAMKK1 P2RX1P2RX1 ATP2A3 ZZEF1 MGC32124 ANKFY1 UBE2G1 MGC29671 LOC124976 | |||||||
17 | 17 | 17p12 | 9.68 | 10.8 | 1.12 | 6 | GLP2R RCV1 GAS7 RPS27AP1 MYH13 MYH8 MYH4 MYH1 MYH2 MYH3 SCO1 MDS006 LOC388335 |
LOC400573 | |||||||
18 | 17 | 17p12 | 12.52 | 13.45 | 0.93 | 6 | MYOCD KIAA0672 ELAC2 HS3ST3A1 |
19 | 17 | 17q22 | 51.95 | 52.2 | 0.25 | 5 | NOG |
20 | 17 | 17q24 | 67.83 | 68.01 | 0.18 | 5 | LOC146795 LOC440462 |
Total no. SNPs | 125 | ||||||