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Table 8 Regions with copy number alteration gain from CNAT

From: Genome-wide loss of heterozygosity and copy number alteration in esophageal squamous cell carcinoma using the Affymetrix GeneChip Mapping 10 K array

Chr arm

No. CNA gain regions in each chr arm

Cytoband(s)

Total no. SNPs in each chr arm

1p

1

1p36.13

5

1q

1

1q21.3-1q21

8

2p

1

2p14

6

2q

2

2q11.2 2q21

15

3q

8

3q21-q22 3q22-q23 3q23(2) 3q24 3q26.1 3q27 3q28

69

5p

2

5p15.2 (2)

14

5q

1

5q11.2

5

6p

1

6p25.3-p24

8

7p

3

7p14 (2) 7p12

24

7q

1

7q11.21-q11.22

5

8q

7

8q24.2 (2) 8q24.1 (3) 8q22 8q11.2

66

9q

1

9q31-q31.3

7

14q

2

14q21-q22 14q22-q23

16

17p

1

17p13.1-p13.2

7

18p

1

18p11.31

8

20p

1

20p11.1-q11.1

13

22q

2

22q12.1 22q13.1

11

Total no. gain regions

36

Total no. SNPs

287