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Table 3 Ste11-Box related DNA motifs identified in known and newly discovered M-specific genes

From: Genomewide identification of pheromone-targeted transcription in fission yeast

Gene

Strand

Start

End

M/Ste11-Box Motif1 1

Source

cwp1

D

-175

-134

CATCACACCTGAACAAT AGTACGCACTAAACAAAGA GA C

this study

mam1

R

-161

-122

GTATGGTGGACAACAATG GAGAGTACCTAACAAAG GCCC

[14]

mam23

D

-158

-119

GACA TAGAAGTGTTTTCTGGAAATTCTAAACAAAGA GGA

[14]

mam3

R

-340

-301

TATTTGTCAAT TGCAAT ACTAGTACTAAAACAAAG TCTT

this study

mam44

R

-271

-232

AATTATAGTTGACACAAT AGGGAAGTAAAACAAAGAAA A

this study

mat-Mc2

R

-83

-44

AACTACTTACAGAACAAAGAAA CCCAAAAACAAAG GAA C

this study

mat-Mm2

D

-90

-51

AACTACTTACAGAACAAAGAAA CCCAAAAACAAAG GAA C

this study

mfm1

D

-191

-152

AACAAT TGACTAGACAATG GGTCCGACCAACAAAGAA GT

[14]

mfm2

D

-172

-133

AAACAATG GGTCAAACAAT AGGCAAATGAACAAAGA GA T

[14]

mfm3

D

-192

-153

AACAAT TAACTAGACAAT A000GGCCCAACCAACAAAGAA GT

[14]

SPAC11H11.03c3

R

-319

-280

GACA TAG AAGTGTTTTCTGGAAATTCTAAACAAAGA GGA

[14]

sxa2

R

-326

-287

TTTACAAT CAACAACAAT AGAGATGGGCAACAAAGA CA C

[14]

  1. M-box sequences are underlined and Ste11 binding sites are given in bold.
  2. 1 Motifs were identified in the region 2000 bp upstream of the ATG or in the entire inter-genic region where this is less than 2000 bp
  3. 2 Divergently transcribed gene pair
  4. 3 Divergently transcribed gene pair
  5. 4 Not strictly M-specific. Expression level 2–3 fold higher than that of P cells.