Table 1 Frequencies (%) of nucleotide changes in the chimpanzee genome and the categorized genomic regions
From: Directionality of point mutation and 5-methylcytosine deamination rates in the chimpanzee genome
Category | GC%a | No. of SNPs | A→G | T→C | G→A | C→T | A→C | T→G | G→T | C→A | A→T | T→A | G→C | C→G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Genome | 40.0 | 588,918 | 16.1 | 16.0 | 17.6 | 17.7 | 4.3 | 4.3 | 4.1 | 4.1 | 3.6 | 3.5 | 4.4 | 4.4 |
Intergenic regions | 39.4 | 376,235 | 16.2 | 16.2 | 17.1 | 17.2 | 4.4 | 4.3 | 4.2 | 4.2 | 3.7 | 3.7 | 4.4 | 4.4 |
Genes | 41.0 | 164,294 | 15.9 | 15.8 | 18.3 | 18.6 | 4.2 | 4.2 | 3.7 | 3.8 | 3.3 | 3.3 | 4.5 | 4.4 |
Introns | 39.7 | 84,542 | 16.3 | 15.9 | 17.7 | 18.0 | 4.4 | 4.3 | 3.7 | 3.8 | 3.4 | 3.4 | 4.7 | 4.4 |
Exons | 51.7 | 4416 | 11.7 | 11.3 | 27.3 | 28.3 | 2.2 | 2.2 | 2.9 | 3.0 | 1.5 | 1.4 | 4.0 | 4.2 |
CpG islands | 62.0 | 7205 | 8.7 | 9.0 | 23.1 | 22.9 | 2.7 | 3.1 | 5.9 | 6.0 | 1.9 | 1.9 | 7.4 | 7.4 |