Table 1 Breakdown of cell line sources by tumor type and study
From: SIGMA: A System for Integrative Genomic Microarray Analysis of Cancer Genomes
Tissue origin | Reference | # of samples | Array Platform | PubMed ID | Data Deposited Online? | Location |
|---|---|---|---|---|---|---|
Mantle cell lymphoma | de Leeuw et al. (2004) | 8 | SMRT Array | 15229187 | Yes | bccrc.ca/images/cg/wanlam_mcl_sd.txt |
Non-small cell lung cancer | Garnis et al. (2006) | 28 | SMRT Array | 16187286 | Yes | GEO: GSE2922 |
Small cell lung cancer, Lymphoblast | Coe et al.(2006a) | 21 | SMRT Array | 16130125 | No | This study2 |
Breast Cancer | Shadeo et al. (2006) | 7 | SMRT Array | 16417655 | Yes | GEO: GSE3106 |
NCI-60 panel1 | Garraway et al. (2005) | 58 | Affymetrix 100K SNP Array | 16001072 | Yes | GEO: GSE2520 |
Small cell lung cancer, Breast cancer, Lymphoblast | Zhao et al. (2004) | 33 | Affymetrix 10K SNP Array | 15126342 | Yes | research.dfci.harvard.edu/meyersonlab/snp/cellFile/ |
Non-small cell lung cancer | Zhao et al. (2005) | 27 | Affymetrix 100K SNP Array | 15994928 | Yes | research2.dfci.harvard.edu/dfci/snp/ |
Small cell lung cancer | Kim et al. (2006) | 24 | Stanford cDNA Array | 16116477 | Yes | genome-www5.stanford.edu/ |
Breast cancer | Bredel et al. (2005) | 2 | Stanford cDNA Array | 15858140 | Yes | genome-www5.stanford.edu/ |
Non-small cell lung cancer | Wilson et al. (2006) | 2 | MeDIP Array | 16397413 | No | This study2 |
Osteosarcoma | Lim et al. (2004) | 1 | SMRT Array | 15660435 | No | This study2 |
Assorted3 | - | 56 | SMRT Array | - | - | This study2 |