Table 1 Summary statistics are given for the PASA-generated assemblies in rice and Arabidopsis.
From: Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
Number | Rice | Arabidopsis |
|---|---|---|
Total ESTs | 1,156,705 | 690,119 |
Total mRNAs | 35,078 (33,799 FL) | 66,642 (61,117 FL) |
Total Transcripts | 1,203,577 | 690,119 |
Survive Cleaning | 1,190,502 (33,797 FL) | 683,137 (61,113 FL) |
Map to Genome | 1,149,730 (32,349 FL) | 671,774 (61,085 FL) |
Valid Alignments | 1,055,860 (30,099 FL) | 603,234 (56,668 FL) |
Excluding Single Exon Transcripts | 501,379 (30,099 FL) | 369,092 (56,668 FL) |
PASA alignment assemblies | 43,869 (23,308 FL) | 29,183 (22,951 FL) |
PASA assembly clusters | 27,497 (19,888 FL) | 21,922 (18,701 FL) |