Table 3 Summation of the distribution of the nine alternative splicing classes by events, assembly, cluster and gene for rice and Arabidopsis.
From: Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
Rice | ||||
|---|---|---|---|---|
Isoform | Events | Assemblies | Clusters | Genes |
AA | 6,823 (18.6%) | 8,171 (34.6%) | 2,840 (31.8%) | 2,838 (32.4%) |
AD | 3,604 (9.8%) | 4,652 (19.7%) | 1,599 (17.9%) | 1,619 (18.5%) |
ATE | 4,188 (11.4%) | 4,227 (17.9%) | 1,417 (15.8%) | 1,503 (17.1%) |
SE | 1,339 (3.7%) | 1,707 (7.2%) | 1,142 (12.8%) | 1,119 (12.8%) |
RE | 1,496 (4.1%) | 1,957 (8.3%) | 1,142 (12.8%) | 1,128 (12.9%) |
IWI | 2,444 (6.7%) | 2,513 (10.7%) | 2,139 (23.9%) | 2,085 (23.8%) |
TWI | 2,982 (8.1%) | 3,141 (13.3%) | 2,543 (28.4%) | 2,475 (28.2%) |
SI | 6,887 (18.8%) | 7,592 (32.2%) | 4,035 (45.1%) | 3,933 (44.8%) |
RI | 6,887 (18.8%) | 5,579 (23.7%) | 4,035 (45.1%) | 3,924 (44.7%) |
Totals | 36,650 | 23,592 | 8,945 | 8,772 |
Arabidopsis | ||||
Isoform | Events | Assemblies | Clusters | Genes |
AA | 3,885 (23.9%) | 4,220 (36.2%) | 1,720 (33.4%) | 1,793 (33.8%) |
AD | 1,854 (11.4%) | 2,179 (18.7%) | 865 (16.8%) | 906 (17.1%) |
ATE | 900 (5.5%) | 913 (7.8%) | 340 (6.6%) | 390 (7.3%) |
SE | 396 (2.4%) | 442 (3.8%) | 348 (6.8%) | 357 (6.7%) |
RE | 415 (2.6%) | 486 (4.2%) | 348 (6.8%) | 361 (6.8%) |
IWI | 722 (4.4%) | 729 (6.3%) | 685 (13.3%) | 695 (13.1%) |
TWI | 770 (4.7%) | 794 (6.8%) | 713 (13.8%) | 743 (14.0%) |
SI | 3,655 (22.5%) | 3,667 (31.4%) | 2,467 (47.9%) | 2,521 (47.5%) |
RI | 3,655 (22.5%) | 2,945 (25.3%) | 2,467 (47.9%) | 2,510 (47.2%) |
Totals | 16,252 | 11,665 | 5,155 | 5,313 |