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Table 1 Analysis of the gene expression values, for LDA 1–3

From: Evaluation of low density array technology for quantitative parallel measurement of multiple genes in human tissue

Gene Ct Mean CV% Gene Ct Mean CV%
18S-4342379-18S 14.62 0.44 TNF-a-Hs00174128_m1 31.66 1.42
C3-Hs00163811_m1 19.37 1.96 ITAC-Hs00171138_m1 32.05 1.63
FN precursor-Hs00365052_m1 21.87 1.75 CD62E (SELP)-Hs00174583_m1 32.09 1
GAPDH-4342376-GAPDH 22.25 1.59 ACE-Hs00174179_m1 32.1 4.55
Stat3-Hs00234174_m1 23.76 0.88 CD25-Hs00166229_m1 32.57 1.27
HLA-DRA-Hs00219575_m1 25.2 0.86 CCR5-Hs00152917_m1 33.1 2.14
CD54 (ICAM)-Hs00164932_m1 25.47 1.05 IL-6-Hs00174131_m1 33.56 3.15
HO-1-Hs00157965_m1 25.8 0.84 IL-18-Hs00155517_m1 33.78 1.96
GUSB-Hs99999908_m1 25.98 0.6 CCR4-NM_005508 33.78 5.99
CD68-Hs00154355_m1 26.08 0.88 COX-2-Hs00153133_m1 33.79 1.7
VEGF A-Hs00173626_m1 26.24 1.47 FasL-Hs00181225_m1 33.83 2.83
TGF-b-Hs00171257_m1 26.32 1.59 MEGALIN-Hs00189742_m1 33.87 3.01
MCP-1-Hs00234140_m1 26.68 1.02 CD154(TNFSF5)-Hs00163934_m1 33.96 2.01
NFKB2-Hs00174517_m1 27.2 1.1 CD34-Hs00156373_m1 34.31 2.68
BAX-Hs00180269_m1 27.21 1.05 MADH-3-Hs00232219_m1 34.66 6.11
ECE-1-Hs00154837_m1 27.31 1.77 AT1R(AGTR1)-Hs00241341_m1 34.91 3.29
Mip-1a-Hs00234142_m1 27.55 0.95 CD28-Hs00174796_m1 34.95 3.63
CYP1A2-Hs00167927_m1 27.56 1.03 Collagen IV(COL4A5)-Hs00166712_m1 35 2.2
IkB2-Hs00395088_m1 28 0.77 T-bet (TBX21)-Hs00203436_m1 35.73 4.16
IL-1b-Hs00174097_m1 28.23 2.32 CYP7A1-Hs00167982_m1 35.83 7.25
CD45-Hs00365634_g1 28.25 1.12 GZMB-Hs00188051_m1 35.86 3.05
CD38-Hs00233552_m1 28.33 0.7 TNF-b-Hs00236874_m1 36.34 10.21
GNLY-Hs00246266_m1 28.38 1.65 IFN-g-Hs00174143_m1 36.69 7.65
CSF-1-Hs00174164_m1 28.49 1.18 CD19-Hs00174333_m1 37.32 6.42
CD40-Hs00374176_m1 28.71 0.93 CD152-Hs00175480_m1 37.33 7.63
HLADR-NM_002124 28.77 1.01 IL-15-Hs00174106_m1 37.51 2.79
Rantes-Hs00174575_m1 28.82 1.11 IL-12p35-Hs00168405_m1 37.55 4.59
Mip-3c-Hs00171149_m1 28.88 1.64 CCR7-Hs00171054_m1 37.8 4.16
Fas-Hs00163653_m1 28.99 2.07 ICOS-Hs00359999_m1 37.96 5.78
CD71-Hs99999911_m1 29.02 1.04 CXCR3-Hs00171041_m1 38.23 5.79
IL-7-Hs00174202_m1 29.51 1.84 IL-1a-Hs00174092_m1 38.9 3.39
SKI-Hs00161707_m1 29.63 2.05 IL-3-Hs00174117_m1 39 6
MADH-7-Hs00178696_m1 30.19 1.2 IL-5-Hs00174200_m1 39.08 5.75
Beta Actin-Hs00174609_m1 30.27 1.48 IL-17-Hs00174383_m1 39.22 4.63
PRF1-Hs00169473_m1 30.43 1.24 iNos(Nos2A)-Hs00167248_m1 39.24 4.54
BCL-XL-Hs00169141_m1 30.49 1.75 IL-2-Hs00174114_m1 39.26 4.46
CD8-Hs00233520_m1 30.59 1.3 IL-12p40-Hs00233688_m1 39.45 3.28
CD4-Hs00181217_m1 30.6 2.25 IL-9-Hs00174125_m1 39.73 2.32
IL-8-Hs00174103_m1 30.69 3.06 RENIN(REN)-Hs00166915_m1 39.78 1.94
BCL2-Hs00153350_m1 30.84 1.17 AT2R(AGTR2)-Hs00169126_m1 40 0
CD3-Hs00167894_m1 31.06 1.8 CCR2-Hs00174150_m1 40 0
IL-10-Hs00174086_m1 31.16 1.29 CSF-2-Hs00171266_m1 40 0
CD62E (SELE)-Hs00174057_m1 31.33 1.29 CSF-3-Hs00357085_g1 40 0
IP10-Hs00171042_m1 31.42 1.22 GITR(TNFRSF18)-Hs00188346_m1 40 0
CD86-Hs00199349_m1 31.42 1.59 IL-13-Hs00174379_m1 40 0
Endothelin(EDN1)-Hs00174961_m1 31.48 1.26 IL-4-Hs00174122_m1 40 0
CD80-Hs00175478_m1 31.49 1.81 MYH6-Hs00411908_m1 40 0
  1. This table shows the mean data (from liver cDNA) generated from the 94 primer probe sets across the three arrays of the same format. There were quadruplicate determinations for each gene on each card so the table represents 12 measurements for each gene. Mean Ct (copy threshold) and coefficient of variation (CV%) have been calculated.