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Table 1 Ratios from direct and indirect hybridizations.

From: Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays

 

Kidney vs. Breast

Prostate vs. Breast

Prostate vs. Kidney

 

All

2 SD

All

2 SD

All

2 SD

RefOligo

3,541

1,044 (29%)

3,384

1,158 (34%)

3,406

1,012 (30%)

RefPool

3,447

891 (26%)

2,673

906 (34%)

2,678

820 (31%)

One-Color

3,542

1,035 (29%)

3,386

1,159 (34%)

3,407

1,010 (30%)

Direct

3,206

716 (22%)

3,124

706 (23%)

3,079

483 (16%)

Total number of gene expression ratios calculated from all spots (All) or spots 2 standard deviations (2 SD) above the average slide background are shown. Percentages of ratios above 2 SD are shown in parenthesis.
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BMC Genomics

ISSN: 1471-2164

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