Table 2 Results of the BLAST search for contigs composed of the 38 most redundant ESTs in the non-normalised library from porcine backfat tissue
Contig (bp) | No of ESTs | Accession no | Species | NCBI Blast | |
|---|---|---|---|---|---|
| Â | Â | Â | Â | Gene name | e-value |
contig375 (983) | 685 | NM_214418 | Pig | Mitochondrial solute carrier family 25 member 6 | 0.0 |
contig1036 (940) | 350 | NM_001404 | Human | Eukaryotic translation elongation factor 1 gamma | 0.0 |
contig54 ('1,646) | 327 | NM_174225.1 | Cattle | Actin, alpha skeletal muscle | 0.0 |
contig1727 (1,776) | 312 | AF034253 | Pig | Sus scrofa mitochondrion, complete genome | 0.0 |
Contig1227 (1,442) | 293 | XM_845314 | Dog | Eukaryotic translation elongation factor 1 alpha 1 | 0.0 |
contig265 (950) | 276 | AY459297.1 | Pig | Sus scrofa MHC class I antigen (SLA-1), SLA-1*ms21 allele | 0.0 |
contig155 (1,589) | 241 | NM_005165 | Human | Aldolase C, fructose-bisphosphate | 0.0 |
contig1336 (984) | 229 | NM_001014894.1 | Cattle | Ribosomal protein L4 | 0.0 |
contig34 (880) | 203 | NM_015710.3 | Human | Glioma tumor suppressor candidate region gene 2 protein (p60) | 0.0 |
contig1237 (1,230) | 178 | NM_002593.2 | Human | Procollagen C-endopeptidase enhancer | 0.0 |
contig1086 (1,358) | 168 | NM_003380.2 | Human | Vimentin | 0.0 |
contig944 (1,173) | 124 | NM_174049.1 | Cattle | Enolase 1 | 0.0 |
contig1115 (964) | 112 | NM_001005726.1 | Pig | Annexin A2 | 0.0 |
contig324 (1,173) | 112 | AF464013.1 | Pig | Sus scrofa MHC class I antigen (SLA-1), SLA-1*z allele | 0.0 |
contig1661 (913) | 104 | AY102469.1 | Pig | Sus scrofa MHC class I antigen (SLA-P1), SLA-P1*yn allele | 0.0 |
contig1394 (899) | 85 | AY135594.1 | Pig | Sus scrofa MHC class I antigen (SLA-1), SLA-1*mel9 allele | 0.0 |
contig661 (1,167) | 81 | NM_006082.2 | Human | Tubulin alpha-1 chain | 0.0 |
contig1090 (1,141) | 76 | NM_213920.1 | Pig | Decorin | 0.0 |
contig502 (1,000) | 72 | NM_006088.5 | Human | Tubulin beta-2 | 0.0 |
contig1688 (881) | 69 | XM_614355 | Cattle | Bos taurus similar to heat shock protein, alpha-crystallin-related | 0.0 |
contig542 (1,167) | 62 | NM_001154.2 | Human | Annexin A5 | 0.0 |
contig1269 (873) | 57 | AF464005.1 | Pig | Sus scrofa MHC class I antigen (SLA-B), SLA-B*y allele | 0.0 |
contig671 (876) | 56 | NM_182810.1 | Human | Cyclic-AMP-dependent transcription factor ATF-4 | 0.0 |
contig1601 (1,220) | 55 | NM_174180.2 | Cattle | Short-chain dehydrogenase/reductase 1 | 0.0 |
contig715 (891) | 52 | NM_004925.3 | Human | Aquaporin 3 | 0.0 |
contig130 (873) | 49 | AF464059.2 | Pig | Sus scrofa MHC class I antigen (SLA-B), SLA-B*n allele | 0.0 |
Contig284 (951) | 49 | NM_001035344 | Cattle | Bos taurus Mof4 family associated protein 1 (MRFAP1), | 0.0 |
contig192 (897) | 48 | NM_001013585.2 | Cattle | Endothelial differentiation, sphingolipid G-protein-coupled receptor, 1 | 0.0 |
contig848 (863) | 48 | NM_174715.1 | Cattle | Ribosomal protein L3 | 0.0 |
contig549 (898) | 47 | NM_214276.1 | Pig | Citrate synthase | 0.0 |
contig861 (898) | 47 | XM_587033 | Cattle | Angiopoietin-like 4 | 8e-109 |
contig884 (896) | 47 | NM_001823.3 | Human | Creatine kinase, brain | 0.0 |
contig638 (1,944) | 45 | NM_214246.1 | Pig | Carboxylesterase | 0.0 |
contig657 (1,792) | 44 | NM_023948.3 | Human | Motile sperm domain containing 3 | 0.0 |
Contig1616 (958) | 44 | Q9XSD9 | Pig | PGS2_PIG (Q9XSD9) Decorin precursor (Bone proteoglycan II) (PG-S2) | 0.0 |
contig939 (876) | 41 | AJ131112 | Pig | Sus scrofa MHC class I SLA genes, haplotype H01 | 5e-119 |
contig33 (1,008) | 40 | NM_213774.1 | Pig | CD74 antigen | 0.0 |
contig817 (2,268) | 40 | NM_006472.1 | Human | Thioredoxin interacting protein | 0.0 |