Table 2 Feature indices of RP genes.
From: Characteristics and clustering of human ribosomal protein genes
RP gene | Expression profile cluster | Amino acid encording cluster | Synonymous codon frequency cluster | TATA box (-40 bp ~ -21 bp) | Predicted Transcription factors bound | Feature Index |
|---|---|---|---|---|---|---|
RPLP0 | S2 | O | M | Y | AP | 3.3 |
RPS26 | O | O | M | Y | GC, AP | 3.2 |
RPSA | M | O | S2 | N | AP | 2.3 |
RPS29 | M | S2 | O | N | AP | 2.3 |
RPL5 | M | M | S1 | N | AP | 2.3 |
RPL14 | M | O | S2 | N | GC | 2.3 |
RPLP1 | S1 | S1 | M | N | NRF, AP | 2.2 |
RPLP2 | S1 | S1 | M | N | NRF, GC | 2.2 |
RPL36A | M | S2 | M | Y | NRF, AP | 2.2 |
RPS6 | - | M | S1 | N | NRF, GC, AP | 2.1 |
RPS18 | S2 | M | M | Y | NRF, GC, AP | 2.1 |
RPS27 | M | O | M | Y | GC, YY, AP | 2.1 |
RPL28 | O | M | O | N | NRF, GC, AP | 2.1 |
RPL41 | - | O | O | N | NRF, GC, AP | 2.1 |
RPS3A | M | M | S1 | N | NRF, GC, YY, AP | 2.0 |
RPS4Y | O | M | S1 | N | - | 2.0 |
RPS28 | - | O | M | Y | NRF, GC, YY, AP | 2.0 |
RPL4 | M | M | S1 | N | NRF, GC, YY, AP | 2.0 |
RPL39 | M | S2 | O | N | NRF, GC, YY, AP | 2.0 |
RPS15A | S2 | M | M | N | YY | 1.3 |
RPS23 | M | M | S2 | N | GC | 1.3 |
RPS24 | O | M | M | N | NRF | 1.3 |
RPL6 | O | M | M | N | NRF | 1.3 |
RPL7 | M | M | S2 | N | AP | 1.3 |
RPL9 | - | M | S2 | N | AP | 1.3 |
RPL37A | M | S2 | M | N | NRF | 1.3 |
RPS15 | M | M | O | N | NRF, AP | 1.2 |
RPS21 | - | O | M | N | GC, AP | 1.2 |
RPL31 | O | M | M | N | NRF, GC | 1.2 |
RPL32 | O | M | M | N | NRF, AP | 1.2 |
RPL35 | O | M | M | N | GC, AP | 1.2 |
RPL37 | - | S2 | M | N | NRF, AP | 1.2 |
RPS2 | O | M | M | N | NRF, GC, AP | 1.1 |
RPS3 | M | O | M | N | NRF, YY, AP | 1.1 |
RPS5 | - | O | M | N | NRF, GC, AP | 1.1 |
RPS12 | - | O | M | N | GC, YY, AP | 1.1 |
RPS17 | O | M | M | N | NRF, GC, AP | 1.1 |
RPS25 | - | M | S2 | N | NRF, GC, AP | 1.1 |
RPL3 | M | M | O | N | NRF, GC, YY | 1.1 |
RPL17 | M | M | S2 | N | NRF, YY, AP | 1.1 |
RPL21 | M | M | S2 | N | GC, YY, AP | 1.1 |
RPL29 | S2 | M | M | N | NRF, GC, AP | 1.1 |
RPS13 | M | M | S2 | N | NRF, GC, YY, AP | 1.0 |
RPS27A | M | M | S2 | N | NRF, GC, YY, AP | 1.0 |
RPL10 | - | M | M | Y | NRF, GC, YY, AP | 1.0 |
RPL27A | O | M | M | N | NRF, GC, YY, AP | 1.0 |
RPS9 | - | M | M | N | AP | 0.3 |
RPS11 | M | M | M | N | YY | 0.3 |
RPL7A | M | M | M | N | GC | 0.3 |
RPL13 | M | M | M | N | NRF | 0.3 |
RPL13A | M | M | M | N | YY | 0.3 |
RPL22 | M | M | M | N | GC | 0.3 |
RPL34 | - | M | M | N | NRF | 0.3 |
RPS7 | M | M | M | N | GC, AP | 0.2 |
RPS10 | - | M | M | N | NRF, GC | 0.2 |
RPS20 | M | M | M | N | GC, AP | 0.2 |
RPS30 | M | M | M | N | GC, AP | 0.2 |
RPL8 | M | M | M | N | NRF, AP | 0.2 |
RPL10A | M | M | M | N | NRF, GC | 0.2 |
RPL11 | M | M | M | N | NRF, GC | 0.2 |
RPL12 | - | M | M | N | GC, AP | 0.2 |
RPL18 | M | M | M | N | GC, AP | 0.2 |
RPL23A | M | M | M | N | GC, YY | 0.2 |
RPL26 | M | M | M | N | NRF, AP | 0.2 |
RPL35A | - | M | M | N | GC, AP | 0.2 |
RPS4X | M | M | M | N | NRF, GC, AP | 0.1 |
RPS8 | M | M | M | N | GC, YY, AP | 0.1 |
RPS16 | M | M | M | N | NRF, GC, AP | 0.1 |
RPS19 | M | M | M | N | NRF, GC, AP | 0.1 |
RPL15 | M | M | M | N | GC, YY, AP | 0.1 |
RPL18A | - | M | M | N | NRF, YY, GC | 0.1 |
RPL19 | M | M | M | N | NRF, GC, AP | 0.1 |
RPL23 | M | M | M | N | NRF, GC, AP | 0.1 |
RPL24 | M | M | M | N | NRF, YY, GC | 0.1 |
RPL27 | - | M | M | N | NRF, GC, AP | 0.1 |
RPL30 | M | M | M | N | NRF, YY, AP | 0.1 |
RPL36 | - | M | M | N | NRF, YY, AP | 0.1 |
RPL38 | M | M | M | N | NRF, GC, AP | 0.1 |
RPL40 | M | M | M | N | GC, YY, AP | 0.1 |
RPS14 | - | M | M | N | NRF, GC, YY, AP | 0.0 |