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Table 1 Genes selected by in silico subtraction

From: Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development

Gene AGI code Imm. seed ESTs Indi- ferent ESTs Definition Functional category Pattern of expression1 Mutants Tandem arrays Segmental duplication
At1g03790 1 5 Zinc finger (CCCH-type) family protein Regulation of gene expression IIc - 1 1
At1g03890 41 22 Cruciferin 12S seed storage protein Nutrient reservoir IIb - 2 1
At1g14950 2 15 Major latex protein type1 Secondary metabolism IIc - 4 1
At1g48130 2 12 Peroxiredoxin Response to abiotic stress IIb - 1 1
At1g48660 1 0 Auxin-responsive GH3 family protein Development IIc - 3 1
At1g62060 32 25 Unknown Unknown IIa - 2 1
At1g65090 2 6 Unknown Unknown IIb - 1 1
At1g67100 3 3 Seed specific protein Bn15D17A Unknown IIb - 1 1
At1g73190 8 16 Tonoplast intrinsic protein 3.1 Protein processing IIb - 1 2
At1g80090 3 2 Unknown Unknown IIb - 1 1
At2g28420 1 4 Lactoylglutathione lyase family protein Carbohydrate metabolism IIc - 1 1
At2g33520 1 1 Unknown Unknown IIc - 1 1
At2g34700 2 4 Proline-rich glycoprotein Development I - 1 1
At3g01570 15 52 Oleosin Nutrient reservoir IIb - 1 1
At3g04170 1 0 Germin-like protein subfamily 1 Unknown I - 5 1
At3g04190 1 0 Germin-like protein subfamily 1 Unknown I - 5 1
At3g12960 1 0 Similar to seed maturation protein PM28 Unknown IIc - 1 1
At3g24650 6 3 ABI3 protein Regulation of gene expression IIb Abi32 1 1
At3g27660 7 0 Oleosin Nutrient reservoir IIb - 1 1
At3g48580 1 1 Xyloglucan:xyloglucosyl transferase Carbohydrate metabolism IIc - 1 1
At3g54940 4 18 Cysteine proteinase Protein processing IIb - 1 1
At3g60730 2 2 Pectinesterase-like protein Development IIc - 1 1
At3g61040 1 0 Cytochrome P450 monooxygenase-like Respiration and energy IIc - 1 1
At3g62730 55 17 Desiccation-related protein Response to abiotic stress IIb - 1 1
At3g63040 1 0 Unknown Unknown IIb - 1 1
At4g25140 1 5 Glycine-rich protein/ oleosin Nutrient reservoir IIb - 1 1
At4g27150 68 33 2S seed storage protein 2 precursor Nutrient reservoir IIb - 4 1
At4g28520 92 4 12S cruciferin seed storage protein (CRU3) Nutrient reservoir IIb - 1 1
At4g36700 48 16 Globulin-like protein Nutrient reservoir IIa - 1 1
At4g37050 2 5 Patatin-like Nutrient reservoir IIa - 3 1
At5g01670 1 1 Aldose reductase-like protein Carbohydrate metabolism IIc - 1 1
At5g03860 1 18 Malate synthase Carbohydrate metabolism IIc - 1 1
At5g04010 1 0 Unknown Unknown IIc - 1 1
At5g07190 10 15 Embryo-specific protein 3 (ATS3) Unknown IIb - 1 1
At5g09640 10 4 Serine carboxypeptidase-like Protein processing I Sng23 1 1
At5g22470 8 1 Poly (ADP-ribose) polymerase family protein Protein processing IIc - 1 1
At5g40420 39 68 Oleosin Nutrient reservoir IIb - 1 1
At5g44310 5 1 Late embryogenesis abundant protein-like Response to abiotic stress IIc - 1 1
At5g45690 4 6 Unknown Unknown IIc - 1 1
At5g45830 1 1 Unknown Unknown IIc - 1 1
At5g48100 30 19 Laccase Response to abiotic stress IIa - 1 1
At5g49190 9 0 Sucrose synthase (SUS2) Carbohydrate metabolism I - 1 1
At5g50700 9 41 11-beta-hydroxysteroid dehydrogenase-like Response to abiotic stress IIb - 2 1
At5g54740 7 37 2S storage protein-like Nutrient reservoir IIb - 1 1
At5g55240 6 3 Embryo-specific protein 1 Unknown IIb - 1 1
At5g57260 1 0 Cytochrome P450 Respiration and energy IIb - 1 2
At5g59170 11 6 Cell wall protein precursor, extensin Development IIb - 1 1
At5g62490 2 5 AtHVA22b Response to abiotic stress IIc - 1 1
At5g62800 1 0 Seven in absentia (SINA) family protein Protein processing IIb - 1 1
  1. (1) Information in Figure 4.
  2. (2) Mutant is abscisic acid-insensitive and lacks seed dormancy.
  3. (3) Mutant accumulates sinapoylglucose instead of sinapoylcholine.