Table 1 Genes selected by in silico subtraction
Gene AGI code | Imm. seed ESTs | Indi- ferent ESTs | Definition | Functional category | Pattern of expression1 | Mutants | Tandem arrays | Segmental duplication |
|---|---|---|---|---|---|---|---|---|
At1g03790 | 1 | 5 | Zinc finger (CCCH-type) family protein | Regulation of gene expression | IIc | - | 1 | 1 |
At1g03890 | 41 | 22 | Cruciferin 12S seed storage protein | Nutrient reservoir | IIb | - | 2 | 1 |
At1g14950 | 2 | 15 | Major latex protein type1 | Secondary metabolism | IIc | - | 4 | 1 |
At1g48130 | 2 | 12 | Peroxiredoxin | Response to abiotic stress | IIb | - | 1 | 1 |
At1g48660 | 1 | 0 | Auxin-responsive GH3 family protein | Development | IIc | - | 3 | 1 |
At1g62060 | 32 | 25 | Unknown | Unknown | IIa | - | 2 | 1 |
At1g65090 | 2 | 6 | Unknown | Unknown | IIb | - | 1 | 1 |
At1g67100 | 3 | 3 | Seed specific protein Bn15D17A | Unknown | IIb | - | 1 | 1 |
At1g73190 | 8 | 16 | Tonoplast intrinsic protein 3.1 | Protein processing | IIb | - | 1 | 2 |
At1g80090 | 3 | 2 | Unknown | Unknown | IIb | - | 1 | 1 |
At2g28420 | 1 | 4 | Lactoylglutathione lyase family protein | Carbohydrate metabolism | IIc | - | 1 | 1 |
At2g33520 | 1 | 1 | Unknown | Unknown | IIc | - | 1 | 1 |
At2g34700 | 2 | 4 | Proline-rich glycoprotein | Development | I | - | 1 | 1 |
At3g01570 | 15 | 52 | Oleosin | Nutrient reservoir | IIb | - | 1 | 1 |
At3g04170 | 1 | 0 | Germin-like protein subfamily 1 | Unknown | I | - | 5 | 1 |
At3g04190 | 1 | 0 | Germin-like protein subfamily 1 | Unknown | I | - | 5 | 1 |
At3g12960 | 1 | 0 | Similar to seed maturation protein PM28 | Unknown | IIc | - | 1 | 1 |
At3g24650 | 6 | 3 | ABI3 protein | Regulation of gene expression | IIb | Abi32 | 1 | 1 |
At3g27660 | 7 | 0 | Oleosin | Nutrient reservoir | IIb | - | 1 | 1 |
At3g48580 | 1 | 1 | Xyloglucan:xyloglucosyl transferase | Carbohydrate metabolism | IIc | - | 1 | 1 |
At3g54940 | 4 | 18 | Cysteine proteinase | Protein processing | IIb | - | 1 | 1 |
At3g60730 | 2 | 2 | Pectinesterase-like protein | Development | IIc | - | 1 | 1 |
At3g61040 | 1 | 0 | Cytochrome P450 monooxygenase-like | Respiration and energy | IIc | - | 1 | 1 |
At3g62730 | 55 | 17 | Desiccation-related protein | Response to abiotic stress | IIb | - | 1 | 1 |
At3g63040 | 1 | 0 | Unknown | Unknown | IIb | - | 1 | 1 |
At4g25140 | 1 | 5 | Glycine-rich protein/ oleosin | Nutrient reservoir | IIb | - | 1 | 1 |
At4g27150 | 68 | 33 | 2S seed storage protein 2 precursor | Nutrient reservoir | IIb | - | 4 | 1 |
At4g28520 | 92 | 4 | 12S cruciferin seed storage protein (CRU3) | Nutrient reservoir | IIb | - | 1 | 1 |
At4g36700 | 48 | 16 | Globulin-like protein | Nutrient reservoir | IIa | - | 1 | 1 |
At4g37050 | 2 | 5 | Patatin-like | Nutrient reservoir | IIa | - | 3 | 1 |
At5g01670 | 1 | 1 | Aldose reductase-like protein | Carbohydrate metabolism | IIc | - | 1 | 1 |
At5g03860 | 1 | 18 | Malate synthase | Carbohydrate metabolism | IIc | - | 1 | 1 |
At5g04010 | 1 | 0 | Unknown | Unknown | IIc | - | 1 | 1 |
At5g07190 | 10 | 15 | Embryo-specific protein 3 (ATS3) | Unknown | IIb | - | 1 | 1 |
At5g09640 | 10 | 4 | Serine carboxypeptidase-like | Protein processing | I | Sng23 | 1 | 1 |
At5g22470 | 8 | 1 | Poly (ADP-ribose) polymerase family protein | Protein processing | IIc | - | 1 | 1 |
At5g40420 | 39 | 68 | Oleosin | Nutrient reservoir | IIb | - | 1 | 1 |
At5g44310 | 5 | 1 | Late embryogenesis abundant protein-like | Response to abiotic stress | IIc | - | 1 | 1 |
At5g45690 | 4 | 6 | Unknown | Unknown | IIc | - | 1 | 1 |
At5g45830 | 1 | 1 | Unknown | Unknown | IIc | - | 1 | 1 |
At5g48100 | 30 | 19 | Laccase | Response to abiotic stress | IIa | - | 1 | 1 |
At5g49190 | 9 | 0 | Sucrose synthase (SUS2) | Carbohydrate metabolism | I | - | 1 | 1 |
At5g50700 | 9 | 41 | 11-beta-hydroxysteroid dehydrogenase-like | Response to abiotic stress | IIb | - | 2 | 1 |
At5g54740 | 7 | 37 | 2S storage protein-like | Nutrient reservoir | IIb | - | 1 | 1 |
At5g55240 | 6 | 3 | Embryo-specific protein 1 | Unknown | IIb | - | 1 | 1 |
At5g57260 | 1 | 0 | Cytochrome P450 | Respiration and energy | IIb | - | 1 | 2 |
At5g59170 | 11 | 6 | Cell wall protein precursor, extensin | Development | IIb | - | 1 | 1 |
At5g62490 | 2 | 5 | AtHVA22b | Response to abiotic stress | IIc | - | 1 | 1 |
At5g62800 | 1 | 0 | Seven in absentia (SINA) family protein | Protein processing | IIb | - | 1 | 1 |