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Table 1 Identifying modules that repeated from one dataset to another

From: Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks

Ontology term

rRNA

Prot

Ubiq

 

DNA Dmg

Env Stress

Cell Cycle

DNA Dmg

Env Stress

Cell Cycle

DNA Dmg

Env Stress

Cell Cycle

35S primary transcript processing

1E-17

8.8E-16

7.5E-16

0.17

0.51

0.52

0.26

1

0.16

processing of 20S pre-rRNA

2E-32

5E-19

3.8E-32

0.018

0.37

1

0.17

1

0.11

ribosomal large subunit biogenesis

9.6E-13

0.0000071

3.5E-15

0.38

1

0.38

1

1

0.62

rRNA modification

2.1E-08

0.0043

0.00014

0.66

0.019

0.00066

1

1

0.62

rRNA processing

1.2E-25

1.6E-16

2.5E-23

0.48

1

0.62

0.11

1

0.046

protein biosynthesis

0.0001

1.1E-11

0.0023

5.9E-83

5.6E-108

1.4E-80

0.53

0.42

0.00033

translational elongation

0.62

0.14

0.63

2.1E-08

3E-08

1.7E-09

1

1

0.64

translational initiation

0.19

1

0.025

0.000017

1.8E-14

3.4E-07

0.41

1

0.25

ubiquitin-dependent protein catabolism

0.039

0.02

0.071

0.027

0.048

0.018

2.5E-25

7.3E-25

6.3E-17

ATP-dependent RNA helicase activity

7.2E-11

9.2E-08

4.1E-11

0.39

0.62

1

1

1

0.62

DNA-directed RNA polymerase activity

6.1E-13

4E-08

1.4E-09

0.77

0.012

0.13

0.42

1

0.4

snoRNA binding

1.3E-27

7.6E-17

2.4E-25

0.042

0.51

0.76

0.42

1

0.16

structural constituent of ribosome

0.00012

2.2E-11

0.000078

3.1E-92

5.3E-117

1.8E-95

0.097

0.41

0.0021

translation initiation factor activity

0.16

0.48

0.14

4.7E-08

5.5E-17

2.3E-10

1

1

0.39

endopeptidase activity

0.25

0.21

0.62

0.16

0.62

0.39

9.2E-21

2.6E-18

2.7E-11

nucleolus

1.6E-48

3.4E-29

1.3E-45

0.18

0.65

0.84

0.021

0.48

0.0056

nucleus

1.2E-18

8.3E-13

7.8E-10

0.0053

2.1E-07

0.12

0.0048

1

0.033

small nucleolar ribonucleoprotein complex

7.9E-20

2.8E-09

1.3E-14

0.16

0.67

0.42

0.63

1

0.39

cytosolic large ribosomal subunit

0.03

0.0000016

0.0087

2.1E-65

3.4E-75

6.1E-67

0.021

1

0.0056

cytosolic small ribosomal subunit

0.059

0.0013

0.26

1.5E-41

1.2E-47

4.6E-42

0.073

1

0.03

ribosome

1

0.39

0.3

2.7E-09

6.2E-14

3.7E-09

1

1

0.62

  1. *For each module in each dataset analyzed, an EASE analysis [25] was performed by using Fisher's exact test and the resulting p-values were placed into the table based on the prevalence of the GO (Gene Ontology) term being searched for. The most significant enrichments for a given term are indicated in italics
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BMC Genomics

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