Table 1 Genes more highly expressed in the duodenum of genetically susceptible animals compared to resistant
Human Refseq: Genbank accession number | Gene description | Gene name | Ensembl human gene Cytogenetic band | Contig BLAST E value | Fold increase in expression | P value |
|---|---|---|---|---|---|---|
NM_003226* | Intestinal trefoil factor 3 | TFF3 | 21q22.3 | 3 × 10-59 | 1.2 | 7.7 × 10-20 |
NM_006398* | Ubiquitin D | UBD | 6p22.1 | 1 × 10-52 | 1.3 | 1.8 × 10-12 |
NM_003122* | Serine protease inhibitor, Kazal type 1 | SPINK1 | 5q32 | 2 × 10-58 | 1.3 | 5.5 × 10-10 |
NM_001009555 | SH3 domain protein D19 | EVE1 | 4q31.3 | 0 | 1.8 | 3 × 10-9 |
NM_004295 | TNF receptor-associated factor 4 | TRAF4 | 17q11.2 | 0 | 1.1 | 1.3 × 10-8 |
NM_022342 | Kinesin family member 9 | KIF9 | 3p21.31 | 0 | 1.4 | 1.8 × 10-7 |
NM_005646 | TAR (HIV) RNA binding protein 1 | TARBP1 | 1q42.2 | 0 | 1.2 | 2 × 10-7 |
NM_033503 | Bcl2 modifying factor | BMF | 15q15.1 | 1 × 10-18 | 1.2 | 3.7 × 10-7 |
NM_003392 | Wingless-type MMTV integration site family, member 5A | WNT5A | 3p14.3 | 6 × 10-58 | 1.2 | 4.1 × 10-7 |
NM_000179 | MutS homologue 6 | MSH6 | 2p16.3 | 0 | 1.2 | 8 × 10-7 |
NM_001655 | Archain 1 | ARCN1 | 11q23.3 | 0 | 1.2 | 1.4 × 10-6 |
NM_079423 | Myosin light polypeptide 6 | MYL6 | 12q13.2 | 0 | 1.1 | 1.9 × 10-6 |
NM_006184 | Nucleobindin 1 | NUCB1 | 19q13.33 | 0 | 1.1 | 3.4 × 10-6 |
NM_178156 | Fucosyltransferase 8 | FUT8 | 14q23.3 | 0 | 1.3 | 4.5 × 10-6 |
NM_005533 | Interferon induced protein 35 | IFI35 | 17q21.31 | 3 × 10-77 | 1.1 | 6.7 × 10-6 |
NM_000062 | Serine (or cysteine) proteinase inhibitor, clade G | SERPING1 | 11q12.1 | 2 × 10-50 | 1.2 | 9 × 10-6 |
NM_002133 | Decycling heme oxygenase 1 | HMOX1 | 22q12.3 | 0 | 1.1 | 1.1 × 10-5 |
NM_002816 | Proteasome 26S subunit | PSMD12 | 17q24.2 | 0 | 1.2 | 1.1 × 10-5 |
NM_002116 | Major histocompatibility complex, class I, A | HLA-A | 6p21.33 | 8 × 10-35 | 1.1 | 1.2 × 10-5 |
NM_013442 | Stomatin-like 2 | STOML2 | 9p13.3 | 0 | 1.2 | 1.2 × 10-5 |
NM_201265 | Bone marrow stromal cell-derived ubiquitin-like 7 | BMSC-UbP | 15q24.1 | 0 | 1.3 | 1.5 × 10-5 |
NM_016248 | A kinase anchor protein 11 | AKAP11 | 13q14.11 | 1 × 10-44 | 1.2 | 1.8 × 10-5 |
NM_006808 | Sec61 beta subunit | SEC61B | 9q22.33 | 1 × 10-138 | 1.1 | 1.9 × 10-5 |
NM_032492 | Jagunal homologue 1 | JAGN1 | 3p25.3 | 1 × 10-180 | 1.1 | 2.8 × 10-5 |
NM_002083 | Glutathione peroxidase 2 | GPX2 | 14q23.3 | 0 | 1.2 | 3.3 × 10-5 |