Table 3 Number of divergent genes (Log Ratio <-1) in each strain for each functional category
From: Comparative genomics profiling of clinical isolates of Aeromonas salmonicida using DNA microarrays
| Â | Â | Â | Â | Â | A. salmonicida subsp. salmonicida | A. salmonicida atypical | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Functional category: | Abea | Acab | Asac | Asmd | 33658 | 51413 | 80204-1 | BC6129 | N1718 | N2461 | N2660 | N3395 | N4399 | SS70.1 | N2517 | N4705 |
Antibiotic resist | 11 | 14 | 7 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 6 | 3 | 0 |
CHO/surface | 30 | 36 | 20 | 18 | 4 | 3 | 3 | 4 | 3 | 6 | 3 | 7 | 3 | 9 | 14 | 0 |
Flagella/pilin | 50 | 30 | 29 | 12 | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 2 | 16 | 0 |
IC protect | 3 | 3 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Iron systems | 16 | 15 | 7 | 6 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 2 | 5 | 0 |
OMP | 53 | 56 | 33 | 21 | 6 | 4 | 5 | 1 | 3 | 8 | 1 | 4 | 1 | 16 | 22 | 2 |
Other | 24 | 43 | 22 | 13 | 4 | 3 | 3 | 3 | 3 | 4 | 3 | 3 | 3 | 7 | 18 | 0 |
Plasmid | 28 | 25 | 8 | 10 | 0 | 0 | 0 | 0 | 3 | 4 | 0 | 5 | 1 | 4 | 6 | 0 |
Secretion | 22 | 17 | 4 | 7 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 4 | 0 | 6 | 2 | 0 |
Sigma | 5 | 7 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 2 | 0 |
Toxin | 15 | 19 | 6 | 5 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 2 | 6 | 0 |
Transport | 51 | 59 | 39 | 19 | 3 | 4 | 0 | 0 | 1 | 5 | 0 | 6 | 0 | 15 | 31 | 1 |
Transposon | 119 | 99 | 54 | 62 | 6 | 4 | 6 | 4 | 11 | 36 | 6 | 13 | 7 | 6 | 50 | 2 |
Total | 326 | 321 | 187 | 144 | 17 | 12 | 11 | 7 | 18 | 57 | 7 | 36 | 10 | 49 | 136 | 4 |