Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals

Knoll-Gellida, Anja; André, Michèle; Gattegno, Tamar; Forgue, Jean; Admon, Arie; Babin, Patrick J

doi:10.1186/1471-2164-7-46

Table 2 The most abundant annotated SAGE tags in zebrafish fully-grown follicles and their corresponding UniGene cluster occurrences in two selected zebrafish ovary cDNA libraries

From: Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals

Tag N°	Cluster*	Description	SAGE %	ID.9767 %	ID.15519 %
A. Occurrences > 0.15% in ZEBRAOV and cDNA libraries ID.9767 and ID.15519
2	Dr.1109	Beta-actin2	0.822	0.317	0.752
9	Dr.5628	Similar to contains element MSR1 repetitive element/ZP1-related	0.444	0.220	2.517
12	Dr.25213	Beta-actin1	0.393	0.326	0.698
15	Dr.19916	Egg envelope protein ZP2 variant B [zp2.3]	0.327	0.397	2.610
15	Dr.23439	Zp2.4 protein	0.327	0.740	11.367
19	Dr.26977	Zona pellucida glycoprotein 3b	0.280	0.264	0.399
20	Dr.30322	Zona pellucida glycoprotein 3	0.275	0.705	4.444
43	Dr.5605	Tubulin beta 2	0.193	0.290	0.852
B. Occurrences > 0.15% in ZEBRAOV and cDNA library ID.9767
1	Dr.12439	Transcribed locus similar to rhamnose-binding lectin	1.033	2.530	0.046
3	Dr.46793	Transcribed locus similar to H2B histone family	0.760	0.652	0.008
7	Dr.26975	Claudin d	0.473	0.264	0.023
8	Dr.47296	Zgc:66160	0.451	0.185	0.015
14	Dr.47212	Transcribed locus, moderately similar to thymosin beta 10	0.342	0.485	0.015
41	Dr.5890	Zgc:112226 similar to cathepsin S	0.200	0.194	0.046
59	Dr.12480	Clone IMAGE:5604190, weakly similar to Cd27 binding protein	0.153	0.300	0.008
C. Occurrences > 0.15% in ZEBRAOV and cDNA library ID.15519
26	Dr.30264	Ribosomal protein L3	0.240	0.053	0.169
28	Dr.1012	Retinol dehydrogenase 10	0.240	0.062	0.437
38	Dr.5555	Cyclin A1	0.215	0.123	0.706
D. Occurrences > 0.15% in ZEBRAOV
5	Dr.47289	Metallothionein 2	0.517	0.053	0.031
10	Dr.31066	Heat shock protein 90-beta	0.433	0.079	0.031
11	Dr.729	Lactate dehydrogenase B4	0.411	0.035	0.046
13	Dr.1043	ATP synthase, H+ transporting, mit. F0 complex, subunit 9	0.357	0.149	0
16	Dr.989	Zgc:56419 similar to stress-associated endo. reticulum protein 1	0.324	0.079	0.008
21	Dr.13590	Transcribed locus, moderately similar to zygote arrest 1	0.273	0.106	0
24	Dr.29860	Transcribed locus	0.258	0.053	0
31	Dr.1428	Ribosomal protein S15a	0.236	0.044	0
32	Dr.7383	Zgc:73301 similar to cytochrome oxidase III	0.233	0.018	0
34	Dr.29755	Wu:fe38a04 similar to RL31_HUMAN 60S ribosomal protein L31	0.226	0.018	0
35	Dr.23788	Glutathione S-transferase pi	0.222	0.053	0
36	Dr.14015	Im:7140333 weakly similar to latrophilin; lectomedin-1	0.222	0.106	0.015
40	Dr.24903	Zgc:66168 similar to ubiquitin; 40S ribosomal protein S27a	0.200	0.088	0.015
42	Dr.31131	Zgc:109948 similar to ribosomal protein L10a	0.196	0.062	0.008
44	Dr.1335	Ribosomal protein L36	0.189	0.062	0
46	Dr.6496	Ferritin, heavy polypeptide 1	0.186	0.123	0.015
47	Dr.1209	Signal sequence receptor, beta	0.182	0.009	0.015
51	Dr.11308	Ribosomal protein, large, P0	0.171	0.079	0.023
52	Dr.4947	Cold inducible RNA binding protein	0.167	0.088	0.100
53	Dr.1334	Ribosomal protein S25	0.167	0.035	0

*Zebrafish UniGene Build#87. The values indicated are the percentages of UniGene clusters as evaluated by the percentages of corresponding tags or EST counts in the mRNA population identified in ZEBRAOV SAGE tag database and dbEST libraries. Percentages at over 0.15% were bolded.

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ISSN: 1471-2164

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