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Table 3 Recovery of selected genes with a characterized maternal genetic contribution in ZEBRAOV and zebrafish cDNA libraries ID.9767 and ID.15519*

From: Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals

Gene

GenBank**

SAGE tag

Nbr

Cluster***

% SAGE

% ID. 9767

% ID. 15519

ccnb1 (cyclin B1)

NM_131513

CATGGGTTGAGCAA

25

Dr.25226

0.091

0.229

1.589

pou5f1 (POU domain, class 5, trf 1)

NM_131112

CATGCTCACCCGCA

2

Dr.258

0.007

0.035

0.008

catnb (Beta-catenin 2)

AF329680

CATGCAGAATAAAG

13

Dr.28281

0.047

0.018

n.d.

cdc25 (cdc25)

CO352749

CATGTGTGTGTTCA

6

Dr.8228

0.022

0.035

n.d.

smad5 (MAD homolog 5)

AF127920

CATGTATCTCTACT

1

Dr.20558

0.004

0.027

n.d.

zorba (Orb/CPEB-related)

NM_131427

CATGCAGAGCTATT

14

Dr.614

0.051

n.d.

0.038

dazl (daz-like gene)

NM_131524

CATGGGAGTTGTGG

2

Dr.8159

0.007

n.d.

0.015

oep (one-eyed pinhead)

NM_131092

CATGTCATCTTAAC

1

Dr.581

0.004

n.d.

0.008

foxh1 (forkhead box H1)

NM_131502

CATGAGAATGCAGT

1

Dr.7743

0.004

n.d.

0.008

acvr2b (activin receptor Iib)

AF069500

CATGCAAGACTGTG

2

Dr.21047

0.007

n.d.

n.d.

pbx4 (pre-B-cell leukemia trf 4

NM_131447

CATGTAGGGTGTGT

1

Dr.4926

0.004

n.d.

n.d.

snai1a (snail homolog 1a)

NM_131066

CATGCTTTTTCTTT

1

Dr.15

0.004

n.d.

n.d.

cth1 (cth1)

NM_130939

CATGTTTAACCCTG

n.d.

Dr.621

n.d.

0.044

0.092

alk8 (activin receptor-like kinase 8)

NM_131345

CATGTTTGTGTTGA

n.d.

Dr.606

n.d.

0.018

n.d.

szl (sizzled)

NM_181663

CATGCGCTAGTCAG

n.d.

Dr.25497

n.d.

n.d.

n.d.

cugbp (bruno-like)

BC076238

CATGAGGAGGACGG

n.d.

Dr.16766

n.d.

n.d.

n.d.

gsc (goosecoid)

NM_131017

CATGTACGATGGCA

n.d.

Dr.289

n.d.

n.d.

n.d.

sox19 (SRY-box containing gene 19)

BC078221

CATGAGGTTCAAC

n.d.

Dr.20910

n.d.

n.d.

n.d.

stat3 (signal trans. & act.trans. 3)

NM_131479

CATGTATATAGTGA

n.d.

Dr.8150

n.d.

n.d.

n.d.

vasa (vasa homolog)

NM_131057

CATGGCACAACAGG

n.d.

Dr.559

n.d.

n.d.

n.d.

notch1a (notch homolog 1a)

NM_131441

CATGGCTCCGCCTA

n.d.

Dr.11847

n.d.

n.d.

n.d.

notch1b (notch homolog 1b)

U57973

CATGAAATGAAACT

n.d.

Dr.11846

n.d.

n.d.

n.d.

notch2 (notch homolog 2)

AF334944

CATGTTCACCAAAC

n.d.

Dr.604

n.d.

n.d.

n.d.

notch3 (notch homolog 3)

NM_131549

CATGTGCCCAATGA

n.d.

Dr.17815

n.d.

n.d.

n.d.

  1. *The total number of cDNA clones sequenced was 576 to generate ZEBRAOV instead of 11,344 with cDNA library ID.9767 and 13,029 with cDNA library ID.15519. **GenBank accession number of the sequence from which the SAGE-tag was extracted. ***UniGene Build#87. All the tags were at R1 sense position with the exception of notch1a and notch1b transcripts where a Rn1 sense position was found. Nbr, is the number of times a tag was counted in ZEBRAOV. n.d., the corresponding transcript was non-detected. The values indicated are the percentages of UniGene clusters as evaluated by the percentages of corresponding tags or EST counts in the mRNA population identified in ZEBRAOV SAGE tag database and dbEST libraries.
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BMC Genomics

ISSN: 1471-2164

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