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Table 4 The most abundant annotated SAGE-tags of zebrafish fully-grown follicles and the presence of homologous UniGene clusters in vertebrate ovary/unfertilized egg cDNA libraries

From: Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals

Tag N°

Cluster*

Description

Trout

Salmon

Fugu

Xenopus

Swine

Mouse

Human

A. Occurrences > 0.15% in ZEBRAOV and cDNA libraries ID.9767 and ID.15519

2

Dr.1109

Beta-actin2

Y

N

Y*

Y

Y

Y

Y*

12

Dr.25213

Beta-actin1

       

9

Dr.5628

Similar to contains element MSR1 repetitive element/ZP1-related

N

N

N

Y

N

N

Y

15

Dr.19916

Egg envelope protein ZP2 variant B [zp2.3]

N

N

N

Y

N

N

Y

15

Dr.23439

Zp2.4 protein

Y

N

N

n.i.

n.i.

N

N

19

Dr.26977

Zona pellucida glycoprotein 3b

Y*

Y*

N

Y

N

N

Y

20

Dr.30322

Zona pellucida glycoprotein 3

       

43

Dr.5605

Tubulin beta 2

N

Y

n.i.

Y

Y*

Y*

Y*

B. Occurrences > 0.15% in ZEBRAOV and cDNA library ID.9767

1

Dr.12439

Transcribed locus similar to rhamnose-binding lectin/Latrophilin-2

Y*

Y*

n.i.

Y

N

N

Y

3

Dr.46793

Transcribed locus similar to H2B histone family

n.i.

n.i.

n.i.

N

Y

N

Y

7

Dr.26975

Claudin d

N

n.i.

n.i.

Y*

Y

N

Y

8

Dr.47296

Zgc:66160

N

n.i.

n.i.

Y

N

Y

N

14

Dr.47212

Transcribed locus, moderately similar to thymosin beta 10

N

n.i.

n.i.

Y

Y

N

Y

41

Dr.5890

Zgc:112226 similar to cathepsin S

N

N

n.i.

N

N

N

N

59

Dr.12480

Clone IMAGE:5604190, weakly similar to Cd27 binding protein

N

n.i.

n.i.

Y

N

N

Y

C. Occurrences > 0.15% in ZEBRAOV and cDNA library ID.15519

26

Dr.30264

Ribosomal protein L3

N

N

n.i.

N

N

N

Y*

28

Dr.1012

Retinol dehydrogenase 10

N

n.i.

n.i.

Y

n.i.

N

Y

38

Dr.5555

Cyclin A1

N

n.i.

n.i.

Y*

N

N

Y

D. Occurrences > 0.15% in ZEBRAOV

5

Dr.47289

Metallothionein 2

n.i.

Y

N

N

N

N

N

10

Dr.31066

Heat shock protein 90-beta

N

Y

n.i.

Y

Y

Y*

Y*

11

Dr.729

Lactate dehydrogenase B4

N

N

n.i.

Y

Y

Y*

Y*

13

Dr.1043

ATP synthase, H+ transporting, mit.F0 complex, subunit c (subunit 9)

Y*

Y*

Y*

Y

Y

N

Y

16

Dr.989

Zgc:56419 similar to stress-associated endoplasmic reticulum protein 1

N

n.i.

n.i.

Y

Y

N

Y

21

Dr.13590

Transcribed locus, moderately similar to zygote arrest 1

Y

n.i.

N

Y

N

Y

N

24

Dr.29860

Transcribed locus

N

n.i.

n.i.

n.i.

n.i.

n.i.

n.i.

31

Dr.1428

Ribosomal protein S15a

N

N

n.i.

N

n.i.

Y

Y

32

Dr.7383

Zgc:73301 similar to cytochrome oxidase III

n.i.

n.i.

n.i.

n.i.

n.i.

n.i.

n.i.

34

Dr.29755

Wu:fe38a04 similar to RL31_HUMAN 60S ribosomal protein L31

N

n.i.

n.i.

n.i.

n.i.

N

n.i.

35

Dr.23788

Glutathione S-transferase pi

N

n.i.

n.i.

N

N

n.i.

Y

36

Dr.14015

Im:7140333 weakly similar to latrophilin; lectomedin-1

n.i.

n.i.

n.i.

Y

n.i.

N

Y

40

Dr.24903

Zgc:66168 similar to ubiquitin; 40S ribosomal protein S27a

Y

Y

Y*

Y

Y*

N

Y

42

Dr.26808

Ribosomal protein L10a

N

N

N

N

Y

Y

Y*

44

Dr.1335

Ribosomal protein L36

N

N

N

Y

Y

N

Y

46

Dr.6496

Ferritin, heavy polypeptide 1

Y

Y *

Y

Y

Y *

Y

Y *

47

Dr.1209

Signal sequence receptor, beta

N

n.i.

n.i.

Y

n.i.

N

Y

51

Dr.11308

Ribosomal protein, large, P0

N

n.i.

N

Y

n.i.

n.i.

Y*

52

Dr.4947

Cold inducible RNA binding protein

N

Y

n.i.

Y

Y

Y

Y

53

Dr.1334

Ribosomal protein S25

Y

n.i.

Y

Y

n.i.

Y

Y

  1. *UniGeneBuild#87. The homologous UniGene clusters in other vertebrate species were found with UniGene tool or Blast search. Y, homologous UniGene cluster identified in the library. Y*, homologous UniGene cluster identified in the library with an occurrence >0.15%. N, the homologous UniGene cluster was not detected in the library. n.i., an homologous UniGene cluster was not recovered in UniGene. The presence of homologous clusters in at least four tetrapods or at least five compared vertebrate species are underlined. The vertebrates dbEST cDNA libraries accession numbers used for comparison were: ID.15587 for rainbow trout (Oncorhynchus mykiss); ID.15459 for Atlantic salmon (Salmo salar); ID.11967 for Fugu (Takifugu rubripes); ID.9909 for Xenopus tropicalis; ID.15096 for swine (Sus scrofa), ID.10029, ID.14142, and ID.1389 for mouse (Mus musculus); ID.4908, ID.10552, and ID.5611 for human (Homo sapiens).
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BMC Genomics

ISSN: 1471-2164

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