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Table 3 Effect of effective population size.

From: Linkage disequilibrium interval mapping of quantitative trait loci

N

MSE

Difference in MSE P value

 

T2

HAPim

 

200

0.63

0.44

0.001**

400

0.52

0.44

0.135

800

0.30

0.29

0.782

1600

0.15

0.13

0.414

  1. **: P < 0.01
  2. Mean square errors (MSEs) in cM2 of quantitative trait locus (QTL) location estimates obtained by the T2 and HAPim methods for various effective population sizes. The single nucleotide polymorphism (SNP) marker spacing was 0.125 cM, t = 100 and the initial association was complete.
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BMC Genomics

ISSN: 1471-2164

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