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Table 8 Comparison with the IBD method of Meuwissen and Goddart.

From: Linkage disequilibrium interval mapping of quantitative trait loci

Marker spacing (cM)

Deviation

 

0

1

2

3

4

frequency of allele Q ≥ 0.1

1.0

16

17

9

5

3

0.5

12

20

10

2

6

0.25

12

18

8

6

6

frequency of allele Q ≥ 0

1.0

15

14

6

8

7

0.5

10

17

12

7

4

0.25

11

14

11

5

9

  1. Distribution of the deviations (in marker brackets) of the quantitative trait locus (QTL) location estimates from the correct bracket for the HAPim method under the default simulation scenarios (biallelic markers with N = 100, N s = 100, and t = 100) described in [1]. A deviation of 0 means the estimated position was in the correct marker bracket, 1 means the estimated position was one bracket away from the correct position, etc.
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BMC Genomics

ISSN: 1471-2164

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