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Table 1 Location of identified repeats in the cotton plastid genome. Table includes repeats at least 30 bp in size, with a sequence identity greater than or equal to 90%. IGS = Intergenic spacer. See Fig. 1 for location of repeats on the gene map.

From: The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms

Repeat Number Size (bp) Location
1 30 IGS
2 30 IGS
3 30 rpoC1 intron, rpl16 intron
4 30 ycf2
5 31 IGS
6 32 psbI (5 bp) – IGS, IGS
7 32 IGS
8 32 IGS
9 32 IGS (4 bp) – trnS-GCU, IGS (4 bp) – trnS-UGA
10 32 IGS
11 34 ycf2
12 34 IGS
13 34 rrn23 exon
14 34 ycf2
15 34 ycf2
16 34 ycf2
17 35 ycf3 intron
18 36 ycf3 intron, IGS
19 38 ndhA intron, rps12_3end intron
20 38 ycf2
21 38 ycf2
22 38 ycf2
23 40 IGS
24 43 IGS
25 47 ycf2
26 52 ycf2
27 58 IGS
28 64 ycf2
29 64 ycf2
30 72 psaA exon, psaB exon
31 30 IGS (2 bp) – trnS-GCU, trnS-GGA
32 30 IGS
33 30 IGS
34 31 IGS
35 34 IGS
36 34 ycf2
37 34 ycf2
38 34 IGS
39 34 IGS
40 34 ycf2
41 34 ycf2
42 36 ycf3 intron, IGS
43 38 IGS, ndhA intron
44 38 ycf2
45 38 ycf2
46 41 ycf3 intron, ndhA intron
47 41 IGS
48 43 IGS
49 43 IGS
50 48 IGS
51 52 ycf2
52 52 ycf2
53 64 ycf2
54 64 ycf2