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Table 2 Differences observed by comparison of cotton chloroplast genome sequences with EST sequences obtained by BLAST searches of GenBank.

From: The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms

Gene

Gene size (bp)

Sequence analyzeda

Number of variable sites

Variation type

Position(s)b

Amino acid change

clpP

591

228–537

5

A-G

523

M-A

    

T-C

524

 
    

T-A

528

I-M

    

T-G

531

G-S

    

G-A

532

 

ndhC

363

76–363

1

T-C

323

L-S

rpl20

354

1–354

2

A-G

263

K-R

    

C-U

308

S-L

rpl23

282

85–282

1

C-U

89

S-L

rps3

657

274–657

2

T-G

275

L-R

    

A-C

302

K-T

  1. aSequence analyzed coordinates based on the gene sequence, considering the first base of the initiation codon as bp 1. bVariable position is given in reference to the first base of the initiation codon of the gene sequence.