Table 3 Taxa included phylogenetic analyses with GenBank accession numbers and references. Taxa in bold are those which have not appeared in any previous phylogenetic studies using 61 genes from complete chloroplast genome sequences.
Taxon | GenBank Accession Numbers | Reference |
|---|---|---|
Gymnosperms –Outgroups |  |  |
   Pinus thunbergii | NC_001631 | Wakasugi et al. 1994 [72] |
   Ginkgo biloba | DQ069337–DQ069702 | Leebens-Mack et al 2005 [27] |
Basal Angiosperms | Â | Â |
   Amborella trichopoda | NC_005086 | Goremykin et al. 2003 [29] |
   Nuphar advena | DQ069337–DQ069702 | Leebens-Mack et al 2005 [27] |
   Nymphaea alba | NC_006050 | Goremykin et al. 2004 [28] |
Monocots | Â | Â |
   Acorus americanus | DQ069337–DQ069702 | Leebens-Mack et al 2005 [27] |
   Oryza sativa | NC_001320 | Hiratsuka et al. 1989 [73] |
   Saccharum officinarum | NC_006084 | Asano et al. 2004 [74] |
   Triticum aestivum | NC_002762 | Ikeo and Ogihara, unpublished |
   Typha latifolia | DQ069337–DQ069702 | Leebens-Mack et al 2005 [27] |
   Yucca schidigera | DQ069337–DQ069702 | Leebens-Mack et al 2005 [27] |
   Zea mays | NC_001666 | Maier et al. 1995 [75] |
Magnoliids | Â | Â |
   Calycanthus floridus | NC_004993 | Goremykin et al. 2003 [76] |
Eudicots | Â | Â |
   Arabidopsis thalliana | NC_000932 | Sato et al. 1999 [77] |
   Atropa belladonna | NC_004561 | Schmitz-Linneweber et al. 2002 [53] |
   Cucumis sativus | NC_007144 | Plader et al. unpublished |
   Eucalyptus globulus | AY780259 | Steane 2005 [78] |
   Glycine max | DQ317523 | Saski et al. 2005 [3] |
   Gossypium hirsutum | DQ345959 | Current study |
   Lotus corniculatus | NC_002694 | Kato et al. 2000 [79] |
   Medicago truncatula | NC_003119 | Lin et al., unpublished |
   Nicotiana tabacum | NC_001879 | Shinozaki et al. 1986 [80] |
   Oenothera elata | NC_002693 | Hupfer et al. 2000 [81] |
   Panax schinseng | NC_006290 | Kim and Lee 2004 [82] |
   Ranunculus macranthus | DQ069337–DQ069702 | Leebens-Mack et al 2005 [27] |
   Solanum lycopersicum | DQ347959 | Daniell et al. in press |
   Solanum bulboscastanum | DQ347958 | Daniell et al. in press |
   Spinacia oleracea | NC_002202 | Schmitz-Linneweber et al. 2001 [83] |