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Table 3 Taxa included phylogenetic analyses with GenBank accession numbers and references. Taxa in bold are those which have not appeared in any previous phylogenetic studies using 61 genes from complete chloroplast genome sequences.

From: The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms

Taxon GenBank Accession Numbers Reference
Gymnosperms –Outgroups   
   Pinus thunbergii NC_001631 Wakasugi et al. 1994 [72]
   Ginkgo biloba DQ069337–DQ069702 Leebens-Mack et al 2005 [27]
Basal Angiosperms   
   Amborella trichopoda NC_005086 Goremykin et al. 2003 [29]
   Nuphar advena DQ069337–DQ069702 Leebens-Mack et al 2005 [27]
   Nymphaea alba NC_006050 Goremykin et al. 2004 [28]
Monocots   
   Acorus americanus DQ069337–DQ069702 Leebens-Mack et al 2005 [27]
   Oryza sativa NC_001320 Hiratsuka et al. 1989 [73]
   Saccharum officinarum NC_006084 Asano et al. 2004 [74]
   Triticum aestivum NC_002762 Ikeo and Ogihara, unpublished
   Typha latifolia DQ069337–DQ069702 Leebens-Mack et al 2005 [27]
   Yucca schidigera DQ069337–DQ069702 Leebens-Mack et al 2005 [27]
   Zea mays NC_001666 Maier et al. 1995 [75]
Magnoliids   
   Calycanthus floridus NC_004993 Goremykin et al. 2003 [76]
Eudicots   
   Arabidopsis thalliana NC_000932 Sato et al. 1999 [77]
   Atropa belladonna NC_004561 Schmitz-Linneweber et al. 2002 [53]
   Cucumis sativus NC_007144 Plader et al. unpublished
   Eucalyptus globulus AY780259 Steane 2005 [78]
   Glycine max DQ317523 Saski et al. 2005 [3]
   Gossypium hirsutum DQ345959 Current study
   Lotus corniculatus NC_002694 Kato et al. 2000 [79]
   Medicago truncatula NC_003119 Lin et al., unpublished
   Nicotiana tabacum NC_001879 Shinozaki et al. 1986 [80]
   Oenothera elata NC_002693 Hupfer et al. 2000 [81]
   Panax schinseng NC_006290 Kim and Lee 2004 [82]
   Ranunculus macranthus DQ069337–DQ069702 Leebens-Mack et al 2005 [27]
   Solanum lycopersicum DQ347959 Daniell et al. in press
   Solanum bulboscastanum DQ347958 Daniell et al. in press
   Spinacia oleracea NC_002202 Schmitz-Linneweber et al. 2001 [83]