Table 2 Insertion Sequence elements with association with REP sequences. Table 2 shows the cases with an association ratio greater than 45% and with a total number of mobile elements in the genome equal or greater than four
IS element | IS family | Pfam-domains | Strains | Type | Assoc. ratio |
|---|---|---|---|---|---|
ISPsy8 | IS3 | Transposase_8 (orfA) rve (orfB) | Pseudomonas syringae pv. tomato DC3000 | 1 | 5/5 |
ISPa11 | IS110 | Transposase_20 Transposase_9 | Pseudomonas aeruginosa PA01 | 1 | 6/6 |
ISPpu9 | IS110 | Transposase_9 Transposase_20 | Pseudomonas putida KT2440 | 1 | 7/7 |
ISPpu10 | IS110 | Transposase_9 Transposase_20 | Pseudomonas putida KT2440 | 1 | 7/7 |
ISRm22 | IS4 | Transposase_11 | Sinorhizobium meliloti 1021 | 1 | 10/10 |
ISRm19 | IS110 | Transposase_20 | Sinorhizobium meliloti 1021 | 1 | 4/4 |
ISPsy7 | IS110 | Transposase_9 Transposase_20 | Pseudomonas syringae pv. tomato DC3000 | 2 | 6/10 |
ISRm5 | IS256 | Transposase_mut | Sinorhizobium meliloti 1021 | 2 | 5/7 |
ISNm1106 | IS5 | Transposase_11 | Neisseria meningitidis MC58 | 2 | 4/7 |
ISNm1106 | IS5 | Transposase_11 | Neisseria meningitidis Z2491 | 2 | 7/14 |
Transp. and PivNM COG3547 | IS110 | Transposase_9. Transposase_20. | Neisseria meningitidis MC58 | 2 | 3/5 |