Skip to main content

Table 2 Insertion Sequence elements with association with REP sequences. Table 2 shows the cases with an association ratio greater than 45% and with a total number of mobile elements in the genome equal or greater than four

From: Bacterial repetitive extragenic palindromic sequences are DNA targets for Insertion Sequence elements

IS element IS family Pfam-domains Strains Type Assoc. ratio
ISPsy8 IS3 Transposase_8 (orfA) rve (orfB) Pseudomonas syringae pv. tomato DC3000 1 5/5
ISPa11 IS110 Transposase_20
Transposase_9
Pseudomonas aeruginosa PA01 1 6/6
ISPpu9 IS110 Transposase_9
Transposase_20
Pseudomonas putida KT2440 1 7/7
ISPpu10 IS110 Transposase_9
Transposase_20
Pseudomonas putida KT2440 1 7/7
ISRm22 IS4 Transposase_11 Sinorhizobium meliloti 1021 1 10/10
ISRm19 IS110 Transposase_20 Sinorhizobium meliloti 1021 1 4/4
ISPsy7 IS110 Transposase_9 Transposase_20 Pseudomonas syringae pv. tomato DC3000 2 6/10
ISRm5 IS256 Transposase_mut Sinorhizobium meliloti 1021 2 5/7
ISNm1106 IS5 Transposase_11 Neisseria meningitidis MC58 2 4/7
ISNm1106 IS5 Transposase_11 Neisseria meningitidis Z2491 2 7/14
Transp. and PivNM COG3547 IS110 Transposase_9.
Transposase_20.
Neisseria meningitidis MC58 2 3/5