Gene | Symbol | Putative Function | Expression | ||
---|---|---|---|---|---|
 |  |  | AVG | SE | P-value |
Energy metabolism | |||||
SO0397 | fdrC | fumarate reductase cytochrome B subunit | +3.445 | 0.729 | * |
SO0398 | frdA | fumarate reductase flavoprotein subunit | +3.409 | 0.711 | * |
SO0399 | frdB | fumarate reductase iron-sulfur protein | +1.895 | 0.336 | ** |
SO1017 | nuoF | NADH dehydrogenase I, F subunit | +9.606 | 2.178 | * |
SO2098 | hyaB | quinone-reactive Ni/Fe hydrogenase, large subunit | +3.506 | 0.937 | ** |
SO2361 | ccoP | cytochrome c oxidase, cbb3-type, subunit III | -2.079 | 0.036 | ***** |
SO2362 | ccoQ | cytochrome c oxidase, cbb3-type, CcoQ subunit | -6.711 | 0.099 | **** |
SO2363 | ccoO | cytochrome c oxidase, cbb3-type, subunit II | -27.027 | 0.046 | **** |
SO2364 | ccoN | cytochrome c oxidase, cbb3-type, subunit I | -7.042 | 0.033 | ***** |
SO3034 | Â | ferric iron reductase protein, putative | -2.227 | 0.040 | ***** |
SO3980 | Â | cytochrome c552 nitrite reductase | +3.346 | 0.770 | * |
SO4513 | Â | formate dehydrogenase, alpha subunit | +2.408 | 0.370 | *** |
Transport and binding protiens | |||||
SO0530 | Â | transporter, LysE family | +8.483 | 1.561 | ** |
SO3030 | alcA | siderophore biosynthesis protein | -2.457 | 0.038 | ***** |
SO3031 | Â | siderophore biosynthesis protein, putative | -1.534 | 0.070 | * |
SO3032 | Â | siderophore biosynthesis protein, putative | -2.033 | 0.038 | ***** |
SO3033 | Â | ferric alcaligin siderophore receptor | -2.079 | 0.071 | *** |
SO3134 | dctP | C4-dicarboxylate-binding periplasmic protein | -3.165 | 0.048 | ***** |
SO3135 | Â | C4-dicarboxylate transporter, putative | -2.793 | 0.037 | ***** |
SO3136 | dctM | C4-dicarboxylate transport protein | -1.969 | 0.051 | ***** |
Cellular process | |||||
SO3065 | Â | colicin V production protein | +3.219 | 0.580 | * |
SO4405 | katG-2 | catalase/peroxidase HPI | +5.409 | 1.310 | * |
DNA metabolism | |||||
SO2081 | Â | ATP-dependent helicase, DinG family | +5.111 | 1.493 | * |
Cell envelope | |||||
SO4676 | kdtA | 3-deoxy-D-manno-octulosonic-acid (KDO) transferase | +2.225 | 0.475 | ** |
Biosynthesis ofcofactors, prosthetic groups, and carriers | |||||
SO4723 | Â | molybdopterin biosynthesis MoeA protein, putative | +1.748 | 0.183 | *** |
SO4724 | Â | molvbdenum cofactor biosynthesis protein A | +2.000 | 0.132 | **** |
Amino acid biosynthesis | |||||
SO4054 | metF | 5, 10-methylenetetrahydrofolate reductase | +2.061 | 0.451 | * |
Central intermediary metabolism | |||||
SO3505 | nagA | N-acetylglucosamine-6-phosphate deacetylase | +2.720 | 0.264 | ***** |
SO3628 | Â | glycerate dehydrogenase, degenerate | +4.349 | 1.469 | * |
Signal transduction | |||||
SO2366 | Â | response regulator | -30.303 | 0.028 | ***** |
Unknown function | |||||
SO0796 | Â | GGDEF family protein | +7.824 | 1.795 | * |
SO1312 | Â | TolB domain protein | +4.079 | 1.690 | * |
SO2005 | Â | dskA-type zinc finger protein | +3.096 | 0.503 | *** |
SO3506 | Â | SIS domain protein | +3.049 | 0.667 | ** |
SO4671 | glpG | glpG protein | +2.189 | 0.216 | ***** |
SO4672 | g1pE | glpE protein | +1.574 | 0.142 | ** |