Whitefly (Bemisia tabaci) genome project: analysis of sequenced clones from egg, instar, and adult (viruliferous and non-viruliferous) cDNA libraries

Leshkowitz, Dena; Gazit, Shirley; Reuveni, Eli; Ghanim, Murad; Czosnek, Henryk; McKenzie, Cindy; Shatters, Robert L; Brown, Judith K

doi:10.1186/1471-2164-7-79

Table 5 Drosophila homologs used to discover over-represented ontologies in the B. tabaci contigs and singletons

From: Whitefly (Bemisia tabaci) genome project: analysis of sequenced clones from egg, instar, and adult (viruliferous and non-viruliferous) cDNA libraries

Best GOs	Term	Count	Total	P-Value
(Max: 50)		732	10,309
GO:0005840	Ribosome	106	202	0
GO:0005737	cytoplasm	357	1,800	0
GO:0030529	ribonucleoprotein complex	124	370	0
GO:0005830	cytosolic ribosome (sensu Eukaryota)	74	98	0
GO:0003735	structural constituent of ribosome	106	194	0
GO:0043234	protein complex	306	1623	0
GO:0015934	large ribosomal subunit	58	103	6.50E-81
GO:0015935	small ribosomal subunit	44	74	3.73E-65
GO:0005829	Cytosol	122	440	2.52E-63
GO:0005739	mitochondrion	131	509	2.87E-60
GO:0005622	intracellular	467	3,678	2.12E-58
GO:0044249	cellular biosynthesis	205	1,077	1.06E-55
GO:0043229	intracellular organelle	394	2,919	2.21E-54
GO:0043226	Organelle	394	2,919	2.21E-54
GO:0043228	non-membrane-bound organelle	160	744	3.87E-54
GO:0043232	intracellular non-membrane-bound organelle	160	744	3.87E-54
GO:0044237	cellular metabolism	562	5,047	1.27E-52
GO:0009058	biosynthesis	208	1,145	2.01E-51
GO:0008152	metabolism	584	5,438	7.70E-50
GO:0006412	protein biosynthesis	151	731	4.65E-47
GO:0009059	macromolecule biosynthesis	154	760	2.74E-46
GO:0005743	mitochondrial inner membrane	64	187	3.25E-45
GO:0019866	inner membrane	64	187	3.25E-45
GO:0006119	oxidative phosphorylation	56	152	6.10E-44
GO:0005746	mitochondrial electron transport chain	38	82	1.29E-40
GO:0005740	mitochondrial membrane	68	222	1.37E-40
GO:0042773	ATP synthesis coupled electron transport	35	72	8.45E-40
GO:0050875	cellular physiological process	645	6,729	3.39E-39
GO:0005759	mitochondrial matrix	52	151	7.69E-37
GO:0005842	cytosolic large ribosomal subunit (sensu Eukaryota)	42	57	1.12E-34
GO:0043170	macromolecule metabolism	354	2,902	2.19E-34
GO:0005198	Structural molecule activity	140	760	2.73E-34
GO:0044238	primary metabolism	512	4,908	4.18E-34
GO:0016282	eukaryotic 43S preinitiation complex	43	64	8.21E-33
GO:0044260	cellular macromolecule metabolism	330	2,676	1.98E-32
GO:0015077	monovalent inorganic cation transporter activity	49	151	1.09E-31
GO:0009987	cellular process	661	7,297	2.03E-31
GO:0015078	Hydrogen ion transporter activity	48	149	1.10E-30
GO:0007582	physiological process	674	7,566	1.67E-30
GO:0005623	Cell	512	5,045	3.62E-30
GO:0006091	generation of precursor metabolites and energy	106	532	4.41E-30
GO:0031090	Organelle membrane	82	382	1.28E-26
GO:0005843	cytosolic small ribosomal subunit (sensu Eukaryota)	32	43	1.28E-26
GO:0016283	eukaryotic 48S initiation complex	32	43	1.28E-26
GO:0044267	cellular protein metabolism	293	2,433	1.48E-25
GO:0015399	primary active transporter activity	52	192	3.21E-25
GO:0019538	protein metabolism	293	2,452	7.25E-25
GO:0043231	intracellular membrane-bound organelle	291	2,524	1.50E-21
GO:0043227	membrane-bound organelle	291	2,524	1.50E-21
GO:0005761	mitochondrial ribosome	28	76	1.69E-21
	Ribosome mitochondrial andmetabolism enriched

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ISSN: 1471-2164

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