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Table 4 Conserved syntenic regions with three or more gene pairs between the Arabidopsis genome and EST-anchored peach BAC contigs.

From: Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes

    

Peach

Group

# Pairs

Arabidopsis

Putative Function

EST Name

BAC Contig

pp23

3

AT1G19570

dehydroascorbate reductase

PP_LEa0036C16f

ctg2264

  

AT1G20010

tubulin beta-5 chain (TUB5)

PP_LEa0035B10f

 
  

AT1G20450

dehydrin (ERD10)

PP_LEa0035C17f

 

pp48

3

AT2G18470

protein kinase family protein

PP_LEa0036C20f

ctg2264

  

AT2G18840

integral membrane Yip1 family protein

PP_LEa0034N14f

 
  

AT2G18280

tubby-like protein 2 (TULP2)

PP_LEa0034J18f

 

pp52

4

AT2G40280

Putative methyltransferase

PP_LEa0017H06f

ctg58

  

AT2G39750

Putative methyltransferase

PP_LEa0017H06f

 
  

AT2G39770

GDP-mannose pyrophosphorylase (GMP1)

PP_LEa0005L09f

 
  

AT2G40060

expressed protein

PP_LEa0017F24f

 

pp54

3

AT2G19740

60S ribosomal protein L31 (RPL31A)

PP_LEa0008A18f

ctg9

  

AT2G19680

mitochondrial ATP synthase g subunit

PP_LEa0025C15f

 
  

AT2G19730

60S ribosomal protein L28 (RPL28A)

PP_LEa0001M19f

 

pp69

3

AT3G02200

proteasome family protein

PP_LEa0025D12f

ctg2264

  

AT3G02310

developmental protein SEPALLATA2

PP_LEa0035H10f

 
  

AT3G01520

universal stress protein (USP) family

PP_LEa0025L13f

 

pp94

3

AT4G27880

seven in absentia (SINA) family protein

PP_LEa0035M04f

ctg2264

  

AT4G27560

glycosyltransferase family protein

PP_LEa0036D18f

 
  

AT4G27740

Yippee putative zinc-binding protein

PP_LEa0035H22f

 

pp96

3

AT4G10710

transcriptional regulator-related

PP_LEa0034P24f

ctg2264

  

AT4G11450

expressed protein

PP_LEa0035H16f

 
  

AT4G11030

long-chain-fatty-acid – CoA ligase

PP_LEa0034M07f

 

pp113

3

AT5G66460

 

PP_LEa0003M21f

ctg1505

  

AT5G66140

20S proteasome alpha subunit D2

PP_LEa0027M15f

 
  

AT5G66510

bacterial transferase

PP_LEa0009C17f

 

pp114

4

AT5G08400

expressed protein

PP_LEa0011C13f

ctg1565

  

AT5G08380

alpha-galactosidase

PP_LEa0009B18f

 
  

AT5G08540

expressed protein

PP_LEa0027N06f

 
  

AT5G08410

ferredoxin-thioredoxin reductase

PP_LEa0009N05f

 

pp119

3

AT5G47040

Lon protease homolog 1

PP_LEa0001P13f

ctg190

  

AT5G47020

glycine-rich protein

PP_LEa0012O09f

 
  

AT5G47010

RNA helicase

PP_LEa0010E19f

 

pp126

3

AT5G54010

glycosyltransferase family protein

PP_LEa0036D18f

ctg2264

  

AT5G53940

Yippee putative zinc-binding protein

PP_LEa0035H22f

 
  

AT5G53770

nucleotidyltransferase family protein

PP_LEa0025D10f

 

pp127

3

AT5G51050

mitochondrial substrate carrier family protein

PP_LEa0034P07f

ctg2264

  

AT5G50550

WD-40 repeat family protein/St12p protein

PP_LEa0036H23f

 
  

AT5G51180

expressed protein similar to auxin down-regulated protein

PP_LEa0035K24f

 

pp128

3

AT5G43830

ARG10

PP_LEa0034K23f

ctg2264

  

AT5G44340

tubulin beta-4 chain (TUB4)

PP_LEa0035B10f

 
  

AT5G44090

calcium-binding EF hand family protein

PP_LEa0035H07f

 

pp130

3

AT5G15160

bHLH family protein

PP_LEa0035P14f

ctg2264

  

AT5G14680

universal stress protein (USP) family protein

PP_LEa0025L13f

 
  

AT5G14590

isocitrate dehydrogenase

PP_LEa0034O16f

 

pp132

3

AT5G66460

 

PP_LEa0003M21f

ctg2269

  

AT5G66510

bacterial transferase

PP_LEa0009C17f

 
  

AT5G66140

20S proteasome alpha subunit

PP_LEa0027M15f

 

pp137

3

AT5G53280

expressed protein

PP_LEa0027O13f

ctg378

  

AT5G53310

myosin heavy chain-related

PP_LEa0013H04f

 
  

AT5G53340

galactosyltransferase family protein

PP_LEa0003L02f

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