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Table 5 Conserved syntenic regions with three or more gene pairs between the pseudo-ancestral Arabidopsis genome and EST-anchored peach BAC contigs.

From: Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes

     Peach
Group # Pairs Arabidopsis Putative Function EST Name BAC Contig
pa3 3 AT5G07990 flavonoid 3'-monooxygenase PP_LEa0010I09f ctg1172
   AT5G08100 L-asparaginase/L-asparagine amidohydrolase PP_LEa0007L05f  
   AT5G60910 agamous-like MADS box protein AGL8 PP_LEa0002N13f  
pa4 3 AT2G45560 cytochrome P450 family protein PP_LEa0010I09f ctg1172
   AT3G61040 cytochrome P450 family protein PP_LEa0010I09f  
   AT2G45650 MADS-box protein (AGL6) PP_LEa0002N13f  
pa5 3 AT1G68020 glycosyl transferase family 20 protein PP_LEa0001F16f ctg1172
   AT1G23870 glycosyl transferase family 20 protein PP_LEa0001F16f  
   AT1G24260 MADS-box protein (AGL9) PP_LEa0002N13f  
pa23 3 AT5G66510 contains bacterial transferase hexapeptide repea PP_LEa0009C17f ctg1505
   AT5G66140 20S proteasome alpha subunit D2 PP_LEa0027M15f  
   AT5G66460   PP_LEa0003M21f  
pa26 4 AT5G08380 alpha-galactosidase/melibiase PP_LEa0009B18f ctg1565
   AT5G08540 expressed protein PP_LEa0027N06f  
   AT5G08400 expressed protein predicted proteins PP_LEa0011C13f  
   AT5G23440 ferredoxin-thioredoxin reductase PP_LEa0009N05f  
pa35 3 AT5G26030 ferrochelatase I PP_LEa0004A06f ctg1823
   AT5G11710 epsin N-terminal homology domain-containing protein PP_LEa0003I01f  
   AT5G11770 NADH-ubiquinone oxidoreductase 20 kDa subunit PP_LEa0001H16f  
pa37 3 AT5G47010 RNA helicase PP_LEa0010E19f ctg190
   AT5G47040 Lon protease homolog 1, mitochondrial (LON) PP_LEa0001P13f  
   AT5G47020 glycine-rich protein PP_LEa0012O09f  
pa59 3 AT4G27740 yippee family protein PP_LEa0035H22f ctg2264
   AT4G27880 seven in absentia (SINA) family protein PP_LEa0035M04f  
   AT4G27560 glycosyltransferase family protein PP_LEa0036D18f  
pa61 3 AT5G51050 mitochondrial substrate carrier family protein PP_LEa0034P07f ctg2264
   AT5G51180 expressed protein PP_LEa0035K24f  
   AT5G50550 WD-40 repeat family protein/St12p protein PP_LEa0036H23f  
pa64 3 AT4G14960 tubulin alpha-6 chain (TUA6) PP_LEa0035B10f ctg2264
   AT3G22170 far-red impaired responsive protein PP_LEa0036G03f  
   AT3G22850 similar to auxin down-regulated protein ARG10 PP_LEa0034K23f  
pa71 3 AT2G18280 tubby-like protein 2 (TULP2) PP_LEa0034J18f ctg2264
   AT4G30260 integral membrane Yip1 family protein PP_LEa0034N14f  
   AT2G18470 protein kinase family protein PP_LEa0036C20f  
pa82 3 AT5G66510 contains bacterial transferase hexapeptide repea PP_LEa0009C17f ctg2269
   AT5G66460   PP_LEa0003M21f  
   AT5G66140 20S proteasome alpha subunit D2 PP_LEa0027M15f  
pa103 4 AT3G56080 dehydration-responsive protein-related PP_LEa0017H06f ctg58
   AT2G40060 expressed protein PP_LEa0017F24f  
   AT2G39750 dehydration-responsive family protein PP_LEa0017H06f  
   AT3G55590 GDP-mannose pyrophosphorylase PP_LEa0005L09f  
pa108 3 AT4G29410 60S ribosomal protein L28 (RPL28C) PP_LEa0001M19f ctg9
   AT4G29480 mitochondrial ATP synthase g subunit family protein PP_LEa0025C15f  
   AT2G19740 60S ribosomal protein L31 (RPL31A) PP_LEa0008A18f