Table 5 Conserved syntenic regions with three or more gene pairs between the pseudo-ancestral Arabidopsis genome and EST-anchored peach BAC contigs.
Peach | |||||
|---|---|---|---|---|---|
Group | # Pairs | Arabidopsis | Putative Function | EST Name | BAC Contig |
pa3 | 3 | AT5G07990 | flavonoid 3'-monooxygenase | PP_LEa0010I09f | ctg1172 |
AT5G08100 | L-asparaginase/L-asparagine amidohydrolase | PP_LEa0007L05f | |||
AT5G60910 | agamous-like MADS box protein AGL8 | PP_LEa0002N13f | |||
pa4 | 3 | AT2G45560 | cytochrome P450 family protein | PP_LEa0010I09f | ctg1172 |
AT3G61040 | cytochrome P450 family protein | PP_LEa0010I09f | |||
AT2G45650 | MADS-box protein (AGL6) | PP_LEa0002N13f | |||
pa5 | 3 | AT1G68020 | glycosyl transferase family 20 protein | PP_LEa0001F16f | ctg1172 |
AT1G23870 | glycosyl transferase family 20 protein | PP_LEa0001F16f | |||
AT1G24260 | MADS-box protein (AGL9) | PP_LEa0002N13f | |||
pa23 | 3 | AT5G66510 | contains bacterial transferase hexapeptide repea | PP_LEa0009C17f | ctg1505 |
AT5G66140 | 20S proteasome alpha subunit D2 | PP_LEa0027M15f | |||
AT5G66460 | PP_LEa0003M21f | ||||
pa26 | 4 | AT5G08380 | alpha-galactosidase/melibiase | PP_LEa0009B18f | ctg1565 |
AT5G08540 | expressed protein | PP_LEa0027N06f | |||
AT5G08400 | expressed protein predicted proteins | PP_LEa0011C13f | |||
AT5G23440 | ferredoxin-thioredoxin reductase | PP_LEa0009N05f | |||
pa35 | 3 | AT5G26030 | ferrochelatase I | PP_LEa0004A06f | ctg1823 |
AT5G11710 | epsin N-terminal homology domain-containing protein | PP_LEa0003I01f | |||
AT5G11770 | NADH-ubiquinone oxidoreductase 20 kDa subunit | PP_LEa0001H16f | |||
pa37 | 3 | AT5G47010 | RNA helicase | PP_LEa0010E19f | ctg190 |
AT5G47040 | Lon protease homolog 1, mitochondrial (LON) | PP_LEa0001P13f | |||
AT5G47020 | glycine-rich protein | PP_LEa0012O09f | |||
pa59 | 3 | AT4G27740 | yippee family protein | PP_LEa0035H22f | ctg2264 |
AT4G27880 | seven in absentia (SINA) family protein | PP_LEa0035M04f | |||
AT4G27560 | glycosyltransferase family protein | PP_LEa0036D18f | |||
pa61 | 3 | AT5G51050 | mitochondrial substrate carrier family protein | PP_LEa0034P07f | ctg2264 |
AT5G51180 | expressed protein | PP_LEa0035K24f | |||
AT5G50550 | WD-40 repeat family protein/St12p protein | PP_LEa0036H23f | |||
pa64 | 3 | AT4G14960 | tubulin alpha-6 chain (TUA6) | PP_LEa0035B10f | ctg2264 |
AT3G22170 | far-red impaired responsive protein | PP_LEa0036G03f | |||
AT3G22850 | similar to auxin down-regulated protein ARG10 | PP_LEa0034K23f | |||
pa71 | 3 | AT2G18280 | tubby-like protein 2 (TULP2) | PP_LEa0034J18f | ctg2264 |
AT4G30260 | integral membrane Yip1 family protein | PP_LEa0034N14f | |||
AT2G18470 | protein kinase family protein | PP_LEa0036C20f | |||
pa82 | 3 | AT5G66510 | contains bacterial transferase hexapeptide repea | PP_LEa0009C17f | ctg2269 |
AT5G66460 | PP_LEa0003M21f | ||||
AT5G66140 | 20S proteasome alpha subunit D2 | PP_LEa0027M15f | |||
pa103 | 4 | AT3G56080 | dehydration-responsive protein-related | PP_LEa0017H06f | ctg58 |
AT2G40060 | expressed protein | PP_LEa0017F24f | |||
AT2G39750 | dehydration-responsive family protein | PP_LEa0017H06f | |||
AT3G55590 | GDP-mannose pyrophosphorylase | PP_LEa0005L09f | |||
pa108 | 3 | AT4G29410 | 60S ribosomal protein L28 (RPL28C) | PP_LEa0001M19f | ctg9 |
AT4G29480 | mitochondrial ATP synthase g subunit family protein | PP_LEa0025C15f | |||
AT2G19740 | 60S ribosomal protein L31 (RPL31A) | PP_LEa0008A18f | |||