Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates

Table 1 Accession numbers of Syndecans.

Species	Syndecan-1	Syndecan-2	Syndecan-3	Syndecan-4	References
H. sapiens	NP_002988	NM_002998	NM_14654	NM_002999	96–99
M. musculus	NM_011519	NM_011519	NM_011520	NM_011521	100, 101
G. gallus	XM_419972	NM_001001462	NM_205383	NM_001007869	101–104
D. rerio	Not found	NM_173223	XM_695352	XM_691930	17
T. nigroviridis	Not found	GSTENP000-18305001	GSTENT003-1504001	GSTENP0001-1022001	75
X. laevis	AAB81324	AAB81325	AAB81326	BU915423, CF285173	49, 105
X. tropicalis	Scaffold 100*	NM_001017163	Scaffold 411*	Scaffold 334*	50
B. floridae	B1386782, BW711533, BW936816 and others				53
C. intestinalis	KYOTOGRAIL2005.125.4.2, Gene collection ID: CiGC35101				54, 76
C. savignyi	AB021960				106
A. crassispina	AB063328				107
S. purpuratus	XM_776754
D. melanogaster	NM_166449				108
M. japonicus	CI998451
R. appendiculatus	CD794925, CD788787				85
E. scolopes	DW251986
C. elegans	P50605				8, 9, 83
S. mediterranea	DN308360				84
H. magnipapillata	DT612491
N. vectensis	50645				43
A. tenuis	BAE46797				86, 88
A. palmata	DR9839838, DR984551				88

All numbers are GenBank Accession numbers, except for T. nigroviridis numbers from the Genoscope database and N. vectensis from Stellabase. * scaffold numbers refer to X. tropicalis genome assembly v4.1 (JGI).

ISSN: 1471-2164