SSH | Length (bp) | Best BLASTX match/comments [GenBank accession number] | %ID | Length (AA) | E-value |
---|---|---|---|---|---|
 |  | Best match with another genus |  |  |  |
629-D8 | 1116 | extracellular solute-binding protein, family 1/ABC transporter (Rhodopseudomonas palustris BisB5) [ABE40377] | 38 | 234 | 3e-36 |
629-D9 | >502 | phosphodiesterase (Delftia acidovorans) [AAN52089] | 42 | 107 | 7e-16 |
 |  | Best match with C. jejuni (<80% identity) |  |  |  |
670-H5 | 116 | Outer membrane lipoprotein MapA CJE1173 (C. jejuni RM1221) [AAW35499] | 70 | 31 | 4e-4 |
670-2 | 365 | conserved hypothetical protein CJE0262 (C. jejuni RM1221) [AAW34855] | 76 | 75 | 2e-27 |
1967-D4 | 272 | flagellar hook subunit protein (C. jejuni NCTC 11168) [CAB73715] | 60 | 86 | 3e-18 |
1967-F11 | 369 | Putative membrane protein CJE0032 (C. jejuni RM1221) [AAW34630] | 56 | 107 | 6e-20 |
629-E2 | 1001 | putative periplasmic protein (C. jejuni 81–176) [EAQ73077] | 52 | 209 | 1e-36 |
961-E7 | 750 | capsular polysaccharide biosynthesis protein CJE1602 (C. jejuni RM1221) [AAW36035] | 29 | 240 | 3e-17 |
961-HG5 | 160 | putative sugar transferase, capsule-related (C. jejuni 176.83) [CAI39731] | 47 | 51 | 9e-6 |
961-D5 | 385 | putative glycosyltransferase, LOS-related (C. jejuni ATCC 43446) [AAX33825] | 52 | 126 | 4e-31 |
 |  | Metabolism using alternative terminal electron acceptors |  |  |  |
1967-H9 | 382 | anaerobic dimethyl sulfoxide reductase chain B, DmsB, Cju35 (C. jejuni 81–176) [ABF83738] | 100 | 109 | 8e-62 |
1967-C2 | 310 | probable pyridine nucleotide-disulfide oxidoreductase YkgC (C. jejuni 84-25) [EAQ95476] | 100 | 102 | 1e-51 |
629-C10 | 1213 | cytochrome C biogenesis protein, Cju05 (C. jejuni 81–176) [ABF61591]; gamma-glutamyl transpeptidase, Cju06 (C. jejuni 81–176) [ABF61592] | 100 100 | 211 118 | e-108 1e-92 |
 |  | Other SSH sequences used in the distribution analysis |  |  |  |
1967-A5 | 364 | serine protease, subtilase family (C. jejuni 81–176) [AEQ72903] | 100 | 120 | 8e-32 |
961-A9 | 678 | dTDP-glucose pyrophosphorylase (C. jejuni subsp. doylei 269.97) [EAU03120] | 96 | 154 | 3e-74 |
670-D7 | 466 | putative nickase, cpp17, plasmid pTet/pCC31 – related (C. jejuni HB93-13) [EAQ59637] | 99 | 155 | 5e-77 |