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Table 3 Isolates used in this study and distribution of subtracted sequences.

From: Use of suppression subtractive hybridisation to extend our knowledge of genome diversity in Campylobacter jejuni

Isolate

ST

CC

Source

         
    

1967-H9 (Cju35)

1967-C2

Cj0264c

629-C10 (Cju05)

629-D8

629-D9

1967-A5

961-A9

670-D7

670

21

21

bird

-

+

+

-

-

-

-

-

+

504

21

21

rabbit

-

+

+

-

-

-

-

-

-

587

21

21

rabbit

-

+

+

-

-

-

-

-

-

597

262

21

cattle

-

-

+

-

-

-

-

-

+

684

522

21

cattle

-

+

+

-

-

-

-

-

-

690

522

21

rabbit

-

+

+

-

-

-

-

-

-

1208

806

21

cattle

-

+

+

-

-

-

-

-

-

1747

19

21

cattle

-

-

+

-

-

-

-

+

-

752

19

21

cattle

-

-

+

-

-

-

-

+

-

1768

53

21

bird

-

-

-

-

-

-

-

-

-

1777

53

21

rabbit

-

-

-

-

-

-

-

-

-

2463

21

21

sheep

-

+

+

-

-

-

-

-

-

1271

21

21

sheep

-

+

+

-

-

-

-

-

-

2057

21

21

sheep

-

+

+

-

-

-

-

-

-

2493

21

21

cattle

-

+

+

-

-

-

-

-

-

2628

21

21

water

-

+

+

-

-

-

-

-

-

11200

21

21

human

-

+

+

-

-

-

-

-

-

11239

86

21

human

-

-

+

-

-

-

-

-

-

11255

21

21

human

-

+

+

-

-

-

-

-

-

11258

53

21

human

-

+

-

-

-

-

-

-

-

11272

50

21

human

-

-

+

-

-

-

-

-

-

564

21

21

cattle

-

+

+

-

-

-

-

+

-

2332

21

21

cattle

-

+

+

-

-

-

-

-

-

870

21

21

cattle

-

+

+

-

-

-

-

-

+

NCTC11168

43

21

human

-

-

+

-

-

-

-

-

-

1107

21

21

cattle

-

+

+

-

-

-

-

-

-

11236

21

21

human

-

+

+

-

-

-

-

-

-

11569

21

21

human

-

+

+

-

-

-

-

-

-

11602

21

21

human

-

+

+

-

-

-

-

-

-

11203

61

61

human

-

+

+

-

-

-

-

+

+

11232

61

61

human

-

+

+

-

-

-

-

+

+

11250

61

61

human

-

+

+

-

-

-

-

+

-

11426

61

61

human

-

+

+

-

-

-

-

+

-

11678

61

61

human

-

+

+

-

-

-

-

+

-

11682

61

61

human

-

+

+

-

-

-

-

+

+

665

61

61

cattle

-

+

+

-

-

-

-

+

-

1141

61

61

cattle

-

+

+

-

-

-

-

+

-

1231

61

61

cattle

-

+

+

-

-

-

-

+

+

1244

61

61

cattle

-

+

+

-

-

-

-

+

-

549

61

61

cattle

-

+

+

-

-

-

-

+

-

961

61

61

rabbit

-

+

+

-

-

-

-

+

-

463

45

45

badger

+

-

+

+

+

+

-

-

-

1949

45

45

badger

+

-

+

+

+

-

-

-

-

2076

45

45

badger

+

-

-

+

+

+

-

-

-

759

45

45

cattle

+

-

+

-

+

+

-

-

-

954

45

45

cattle

+

-

+

+

+

+

+

-

-

1488

45

45

cattle

+

-

+

-

+

+

-

-

-

2305

45

45

cattle

+

-

-

+

+

+

-

-

-

762

45

45

bird

+

-

+

-

+

+

-

-

-

1202

137

45

bird

+

-

+

+

+

+

-

-

-

2021

233

45

bird

+

-

-

+

+

+

-

-

-

2487

97

45

bird

+

-

-

+

+

+

-

-

-

935

45

45

rabbit

+

-

+

+

+

+

-

-

-

745

45

45

rabbit

+

-

+

+

+

+

-

-

-

629

45

45

rabbit

+

-

+

+

+

+

-

-

-

11395

45

45

human

+

-

+

-

+

+

-

-

-

11404

45

45

human

+

-

+

-

+

+

-

-

-

11380

45

45

human

+

-

+

-

+

+

-

-

-

11390

45

45

human

+

-

+

+

+

+

-

-

-

2299

257

257

cattle

+

-

-

-

-

-

-

-

-

11207

257

257

human

+

-

-

-

-

-

-

-

-

11279

257

257

human

+

-

-

-

-

-

-

-

-

11305

257

257

human

+

-

-

-

-

-

-

-

-

11311

257

257

human

+

-

-

-

-

-

-

-

-

11201

257

257

human

+

-

-

-

-

-

-

-

-

11237

257

257

human

+

-

-

-

-

-

-

-

-

11359

42

42

human

+

+

+

-

-

-

+

-

-

11421

42

42

human

+

-

+

+

-

-

+

-

-

11429

42

42

human

+

-

+

+

-

-

+

-

-

11781

42

42

human

+

-

+

+

-

-

+

-

-

11997

42

42

human

+

-

+

+

-

-

+

-

-

11400

42

42

human

+

-

+

+

-

-

+

-

-

1967

42

42

cattle

+

+

+

-

-

-

+

-

-

1262

42

42

cattle

+

-

+

+

-

-

+

-

-

1765

42

42

cattle

+

-

+

+

-

-

+

-

-

490

42

42

cattle

+

-

+

+

-

-

+

-

-

11204

48

48

human

-

-

+

-

-

-

-

-

-

11265

48

48

human

-

-

+

-

-

-

-

-

-

11303

48

48

human

-

-

+

-

-

-

-

-

-

11407

48

48

human

-

-

+

-

-

-

-

-

-

11579

48

48

human

-

-

+

-

-

-

-

-

-

C. coli 1387

  

water

-

-

-

-

-

-

-

-

-

  1. The presence (+) or absence (-) of a subtracted sequence is indicated. ST; MLST sequence type. CC; clonal complex
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BMC Genomics

ISSN: 1471-2164

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