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Figure 3 | BMC Genomics

Figure 3

From: A multi-treatment experimental system to examine photosynthetic differentiation in the maize leaf

Figure 3

Comparison of analysis with and without consideration of the stress effect. For a given feature the q-value for testing differential expression between B and M cells under the stress model (qstress) was plotted against the q-value obtained under the simple model (qsimple). A 1,280 unique features selected as qstress < 0.05. Dashed lines cut axes at qstress = 0.05 and qsimple = 0.05. B 4,384 unique features selected as qsimple < 0.05. Features predicted to be M enriched by stress or simple models, in A. or B. respectively, shown in red. Features predicted to be B enriched by stress or simple models, in A. or B. respectively, shown in blue. Four features annotated as PSII components (MZ00023434, MZ00044083, MZ00040590, MZ00041794), not identified as M enriched by the simple model, are shown in yellow in A. Eleven features annotated as heat shock proteins (MZ00000354, MZ00034301, MZ00035916, MZ00035984, MZ00036574, MZ00038036, MZ00039146, MZ00040123, MZ00040558, MZ00040980 and MZ00042904), predicted to be strongly M enriched by the simple model, are shown as green in B.

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