From: CAG-encoded polyglutamine length polymorphism in the human genome
Chromosome Band | Gene Namea | Repeat Sequence from Reference Genome (sense strand)b | Expected Q-tract Length from Reference Genomec | Nd | Observed Q-tract Length Min-Max | Q-tract Mean | Q-tract Variance |
---|---|---|---|---|---|---|---|
17p13.2 | MINK1* | G4N1G5 | Q4LQ5 (SwP) | 162 | 5 – 5 | 5.0 | 0 |
9q34.11 | CIZ1 | G6 | Q6 | 154 | 6 – 6 | 6.0 | 0 |
7q36.2 | PAXIP1L* | G7 | Q7 | 168 | 7 – 7 | 7.0 | 0 |
11q24.3 | PRDM10 | G8 | Q8 | 172 | 8 – 8 | 8.0 | 0 |
4q31.1 | MAML3a* | G9 | Q9 | 156 | 8 – 8 | 8.0 | 0 |
6p21.1 | TFEB | G6 A1G3 | Q10 | 162 | 10 – 10 | 10.0 | 0 |
19p13.11 | CHERP | G6 A1G5 | Q12 | 192 | 12 – 12 | 12.0 | 0 |
12q21.2 | PHLDA1 | G5A1G6 A2G1 | Q15 | 212 | 14 – 14 | 14.0 | 0 |
16p13.3 | CREBBP | G4 A1G3A2G2A1G4 A1 | Q18 | 158 | 18 – 18 | 18.0 | 0 |
4q31.1 | MAML3b* | G3A1G3A1G1A1G8 | Q18 | 166 | 18 – 18 | 18.0 | 0 |
20q11.22 | NCOA6* | G4A4G8 A2G1A1G2A2G1 | Q25 | 166 | 25 – 25 | 25.0 | 0 |
Xq13.1 | MED12* | G5A1G2A1G1A1G5A1G1A1G7 N4G6 | Q26X4Q6 | 205 | 26 – 27 | 26.0 | 0 |
20q13.12 | PRKCBP1 | G7 A1 | Q8 | 152 | 8 – 9 | 8.0 | 0.01 |
15q24.1 | ARID3B | G8 A2G1 | Q11 | 212 | 11 – 12 | 11.0 | 0.01 |
22q11.21 | PCQAPa | G4A1G3N1G5N3G7A1G3N8G3N5G5N1G8 | Q8FQ5X3Q11X16Q5LQ8 | 152 | 11 – 12 | 11.0 | 0.01 |
3p24.3 | SATB1 | G1A1G3A1G1A1G7 | Q15 | 174 | 15 – 16 | 15.0 | 0.01 |
6q16.2 | POU3F2 | G3A1G1A1G3A1G2A1G6 A1G1 | Q21 | 148 | 21 – 22 | 21.0 | 0.01 |
Xq22.3 | FRMPD3 | G4A3G4A3G3A3G7 | Q27 (SwP) | 184 | 26 – 27 | 27.0 | 0.01 |
2q35 | TNS | G9 | Q9 | 178 | 9 – 11 | 9.0 | 0.02 |
19p13.12 | BRD4 | G5 N1G1N1A1G4A1G1A1 | Q5RQEQ8 | 140 | 8 – 9 | 8.0 | 0.03 |
12p13.31 | PHC1 | G5 A2G1A1G2A1G3 | Q15 | 170 | 13 – 15 | 15.0 | 0.05 |
9q32 | C9orf43 | G6 A1G1 | Q8 | 168 | 8 – 9 | 8.1 | 0.07 |
1q21.3 | TNRC4 | A1G8 A1G4A1 | Q15 | 150 | 15 – 18 | 15.0 | 0.08 |
17q12 | SOCS7 | G7 A1 | Q8 (SwP) | 134 | 8 – 9 | 8.1 | 0.12 |
1p31.1 | ST6GALNAC5 | G7 A1G4 | Q12 | 150 | 12 – 14 | 12.1 | 0.13 |
15q26.1 | POLG | G10 A1G2 | Q13 | 164 | 13 – 15 | 13.1 | 0.16 |
22q13.1 | TNRC6B | G8 | Q8 | 166 | 7 – 8 | 7.8 | 0.17 |
12q13.12 | MLL2* | G5N1A1G1A1G1A1N1G7 N1A1G1A1G1A1N1 G2A1G1N1A1G2A1G4N1A2G3A1G1N1A1G2 A1G2N1A1G1A1G1A3G3N1A1G3A1G3 | Q5LQ5LQ7LQ5LQ4LQ8LQ7 LQ6LQ10FQ8 | 184 | 8 – 11 | 10.2 | 0.21 |
7p14.1 | POU6F2 | G10 | Q10 | 168 | 6 – 11 | 10.0 | 0.22 |
Xq28 | CXorf6 | G1A1G8 A1N92G5A1G4 | Q11X92Q10 | 168 | 11 – 12 | 11.6 | 0.25 |
12p13.33 | DCP1B | G9 A1 | Q10 | 136 | 10 – 12 | 10.5 | 0.26 |
17q23.2 | VEZF1 | G12 A6 | Q13 (through intron) | 176 | 8 – 15 | 13.1 | 0.29 |
22q11.21 | PCQAPb | G3A1G2N9A2G1A1G12 | Q6X9Q16 | 152 | 12 – 18 | 16.1 | 0.34 |
3p14.1 | MAGI1 | G5A1G3A1G10 | Q20 | 168 | 16 – 21 | 20.3 | 0.36 |
4q21.21 | BMP2K | G8A1G1A1G4A1G1A1G9 | Q27 | 148 | 23 – 28 | 26.9 | 0.36 |
16q22.1 | NFAT5* | G5 A1G3A1G3A3G1 | Q17 | 168 | 11 – 19 | 17.0 | 0.37 |
12p13.31 | ZNF384 | G14 A1G1 | Q16 | 214 | 11 – 20 | 15.2 | 0.47 |
22q12.1 | MN1* | A1G9 A1G6A1G1A1G1A1G6 | Q28 | 180 | 26 – 30 | 28.7 | 0.53 |
12q24.33 | EP400 | G6A2G14 A1G4A1G1 | Q29 | 158 | 28 – 31 | 28.8 | 0.53 |
12q23.2 | ASCL1 | G12 | Q12 | 148 | 9 – 15 | 12.3 | 0.65 |
6q25.3 | ARID1B | G7 A1G7A1G1A1 | Q18 | 152 | 16 – 23 | 17.7 | 0.69 |
11q21 | MAML2 | G1A1G2A1G13 A1G5A1G1A1G1A1G1A1G2N 5A2G1A1G3N5A1G5A2G5A3G1A2G6A2 | Q31X5Q7X5Q27 (through intron) | 168 | 27 – 31 | 28.3 | 0.75 |
12q24.12 | ATXN2 | G13 A1G9 | Q23 | 124 | 17 – 27 | 22.2 | 0.79 |
9p24.3 | SMARCA2 | G1A2G3A1G13 A1G2 | Q23 | 130 | 18 – 24 | 22.7 | 0.79 |
20q13.12 | NCOA3 | G6A1G9 A1G1A1G1A1G1A1G2A1G2A1 | Q29 | 150 | 26 – 31 | 28.4 | 0.80 |
17p11.2 | RAI1 | G13 A1 | Q14 | 184 | 11 – 17 | 14.6 | 0.84 |
7q31.1 | FOXP2* | G4A1G4A2G2A2G3A5G2A2G5 A1G5 A1G1 | Q40 | 100 | 34 – 40 | 39.8 | 0.85 |
3p14.1 | ATXN7 | G10 | Q10 | 184 | 7 – 14 | 10.4 | 0.89 |
19q13.2 | NUMBL | G6A1G1A1G7 A1G2A1 | Q20 | 156 | 18 – 20 | 18.7 | 0.93 |
12q24.31 | NCOR2 | G3A2G12 | Q16 (through intron) | 172 | 13 – 20 | 16.9 | 0.95 |
15q26.3 | MEF2A | G11 | Q11 | 174 | 8 – 16 | 10.2 | 1.13 |
14q24.3 | C14orf4 | A1G1A1G1A1G6A1G10 A2G1 | Q25 (through intron) | 150 | 20 – 31 | 23.4 | 1.17 |
3q13.2 | KIAA2018 | G11 A1G1A4 | Q14 (through intron) | 150 | 11 – 16 | 12.6 | 1.44 |
1q21.3 | DENND4B | A1G5A1G9 | Q16 | 156 | 13 – 17 | 15.2 | 2.04 |
6p22.3 | ATXN1 | G12T1G1T1G14 | Q12HQHQ14 | 130 | 11 – 21 | 14.6 | 2.23 |
6q27 | TBP | G3A3G8A1G1A1G19 A1G1 | Q38 | 158 | 30 – 41 | 36.9 | 2.26 |
19p13.3 | CACNA1A | G13 | Q13 | 112 | 7 – 16 | 12.1 | 2.42 |
16p12.1 | TNRC6A | G4 A1G3 | Q8 | 166 | 4 – 8 | 7.2 | 2.50 |
6p21.1 | RUNX2 | A1G3A1G4A1G6 A1G6 | Q23 | 100 | 18 – 30 | 22.5 | 3.04 |
16q22.1 | THAP11 | G3A1G5A1G2A1G5A1G10 | Q29 | 170 | 18 – 30 | 28.5 | 3.12 |
1q22 | KCNN3 | G7A1G4N25G14 | Q12X25Q14 | 170 | 15 – 25 | 20.3 | 3.98 |
4p16.3 | HD e | G19 A1G1 | Q21 | 252 | 9 – 33 | 17.2 | 7.18 |
Xq12 | AR | G22 A1N5G6 | Q23X5Q6 | 180 | 14 – 33 | 23.7 | 9.34 |
12p13.31 | ATN1 | G1A1G1A1G15 | Q19 | 168 | 11 – 27 | 17.6 | 11.6 |
14q32.12 | ATXN3 | G2A1N1G1A1G8 | Q3KQ10 | 168 | 10 – 27 | 17.8 | 29.2 |
2q37.1 | TNRC15 | G6 | Q6 | n.d. | n.d. | n.d. | n.d. |