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Table 1 Characterization of sequences with in-silico verified termini

From: ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs)

  

Only One Terminus2

Only Two Termini

At Least One Terminus

 

Num1

5TSS

3TSS

5TNS

3TNS

5TSS+3TSS

5TNS+3TNS

5TSS+3TNS

5TNS+3TSS

5TSS

3TSS

5TNS

3TNS

3' reads

83,021 (48.2%)

730 (0.88%)

80 (0.10%)

21,901 (26.38%)

6,574 (7.92%)

2 (0.00%)

2,306 (2.78%)

1,654 (1.99%)

7 (0.01%)

4,473 (5.39%)

161 (0.19%)

24,929 (30.03%)

12,642 (15.2%)

5' reads

89,208 (51.8%)

3,078 (3.45%)

2,632 (2.95%)

346 (0.39%)

614 (0.69%)

120 (0.13%)

3 (0.00%)

1,238 (1.39%)

14 (0.02%)

4,760 (5.34%)

2,815 (3.16%)

393 (0.44%)

2,172 (2.43%)

Total

172,229 (100%)

3,808 (2.21%)

2,712 (1.57%)

22,247 (12.92%)

7,188 (4.17%)

122 (0.07%)

2,309 (1.34%)

2,892 (1.68%)

21 (0.01%)

9,233 (5.36%)

2,976 (1.73%)

25,322 (14.70%)

14,814 (8.60%)

  1. 1. Num stands for the number of sequence reads and percentage (in parentheses) of either the 3'-, or 5'-reads to the total number of reads.
  2. 2. 5TSS = 5' terminus in the sense strand, 3TSS = 3' terminus in the sense strand, 5TNS = 5' terminus in the non-sense strand and 3TNS = 3' terminus in the non-sense strand.
  3. All these data are retrievable through ConiferEST web interfaces (see Figure 3C, for example).