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Table 3 Distribution of the ycf68 motif in completely sequenced chloroplast genomes.

From: Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

Species

Accession number

Absenta

Present but cannot be functionalb

Present without internal stopsc

Nuphar advena

NC_008788

  

102 aa

Nymphaea alba

NC_006050

  

102 aa

Oryza sativa

NC_001320

  

134 aa

Pinus thunbergii

NC_001631

  

75 aa

Saccharum officinarum

NC_006084

  

134 aa

Triticum aestivum

NC_002762

  

144 aa

Zea mays

NC_001666

  

134 aa

Acorus calamus

NC_007407

 

X

 

Adiantum capillus-veneris

NC_004766

 

X

 

Amborella trichopoda

NC_005086

 

X

 

Anthocerus formosae

NC_004543

 

X

 

Arabidopsis thaliana

NC_000932

 

X

 

Atropa belladonna

NC_004561

 

X

 

Calycanthus floridus

NC_004993

 

X

 

Cucumis sativus

NC_007144

 

X

 

Epifagus virginiana

NC_001568

 

X

 

Eucalyptus globulus d

NC_008115

 

X

 

Huperzia lucidula

NC_006861

 

X

 

Lactuca sativa

NC_007578

 

X

 

Lotus japonicus

NC_002694

 

X

 

Marchantia polymorpha

NC_001319

 

X

 

Medicago polymorpha

NC_003119

 

X

 

Nicotiana tabacum

NC_001879

 

X

 

Oenothera elata

NC_002693

 

X

 

Panax ginseng

NC_006290

 

X

 

Phalaenopsis aphrodite

NC_007499

 

X

 

Physcomitrella patens

NC_005087

 

X

 

Psilotum nudum

NC_003386

 

X

 

Ranunculus macranthus

NC_008796

 

X

 

Spinacia oleracea

NC_002202

 

X

 

Chaetosphaeridium globosum

NC_004115

Xe

  

Chlamydomonas reinhardtii

NC_005353

Xe

  

Chlorella vulgaris

NC_001865

Xe

  

Cyanidioschyzon merolae

NC_004799

Xe

  

Cyanidium caldarium

NC_001840

Xe

  

Cyanophora paradoxa

NC_001675

Xe

  

Eimeria tenella

NC_004823

Xe

  

Emiliania huxleyi

NC_007288

Xe

  

Euglena gracilis

NC_001603

Xe

  

Gracilaria tenuistipitata

NC_006137

Xe

  

Guilardia theta

NC_000926

Xe

  

Mesostigma viride

NC_002186

Xe

  

Nephroselmis olivacea

NC_000927

Xe

  

Odontella sinensis

NC_001713

Xe

  

Porphyra purpurea

NC_000925

Xe

  

Selaginella uncinata

NC_007625

Xf

  

Toxoplasma gondii

NC_001799

Xe

  
  1. a No significant similarity in blast search to published ycf68 regions anywhere in genome
  2. b A complete copy of the motif is present but there are internal stops making it "non-functional"
  3. c ycf68 motif occurs as ORF; Recognized as CDS in the genome annotation
  4. d Published Eucalyptus genome map [18] includes ycf68, but ycf68 region includes internal stops
  5. eno intron in tRNA-Ile
  6. fno tRNA-Ile